8pvb - Revision history

OCA at 09:58, 9 October 2024

2024-10-09T09:58:12Z

← Older revision		Revision as of 09:58, 9 October 2024
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	<table><tr><td colspan='2'>[[8pvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PVB FirstGlance]. <br>		<table><tr><td colspan='2'>[[8pvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PVB FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.6Å</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.6Å</td></tr>
	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=HSM:HISTAMINE'>HSM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=V8D:ethyl+1-[(1R)-1-phenylethyl]~~-1H-~~imidazole-5-carboxylate'>V8D</scene></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=HSM:HISTAMINE'>HSM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=V8D:ethyl+3-[(1~{R})-1-phenylethyl]imidazole-4-carboxylate'>V8D</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pvb OCA], [https://pdbe.org/8pvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pvb RCSB], [https://www.ebi.ac.uk/pdbsum/8pvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pvb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pvb OCA], [https://pdbe.org/8pvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pvb RCSB], [https://www.ebi.ac.uk/pdbsum/8pvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pvb ProSAT]</span></td></tr>
	</table>		</table>
	== ~~Disease~~ ==		<div style="background-color:#fffaf0;">
	~~[https://www~~.~~uniprot~~.~~org/uniprot/GBRB3_HUMAN GBRB3_HUMAN] Autism;Childhood absence epilepsy~~. ~~Disease susceptibility is associated~~ with ~~variations affecting~~ the ~~gene represented in this entry~~.		== Publication Abstract from PubMed ==
	~~== Function ==~~		Electron cryomicroscopy can, in principle, determine the structures of most biological molecules but is currently limited by access, specimen preparation difficulties, and cost. We describe a purpose-built instrument operating at 100 keV-including advances in electron optics, detection, and processing-that makes structure determination fast and simple at a fraction of current costs. The instrument attains its theoretical performance limits, allowing atomic resolution imaging of gold test specimens and biological molecular structure determination in hours. We demonstrate its capabilities by determining the structures of eleven different specimens, ranging in size from 140 kDa to 2 MDa, using a fraction of the data normally required. CryoEM with a microscope designed specifically for high-efficiency, on-the-spot imaging of biological molecules will expand structural biology to a wide range of previously intractable problems.
	~~[https~~:/~~/www~~.~~uniprot~~.~~org~~/~~uniprot~~/~~GBRB3_HUMAN GBRB3_HUMAN] GABA~~, the ~~major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA~~/~~benzodiazepine receptor and opening an integral chloride channel.~~
			Structure determination by cryoEM at 100 keV.,McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ Proc Natl Acad Sci U S A. 2023 Dec 5;120(49):e2312905120. doi: , 10.1073/pnas.2312905120. Epub 2023 Nov 27. PMID:38011573<ref>PMID:38011573</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 8pvb" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 14:05, 29 November 2023

2023-11-29T14:05:19Z

@@ Line 1: / Line 1: @@
-The entry 8pvb is ON HOLD  until Paper Publication
+==Structure of GABAAR determined by cryoEM at 100 keV==
+<StructureSection load='8pvb' size='340' side='right'caption='[[8pvb]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[8pvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PVB FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=HSM:HISTAMINE'>HSM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=V8D:ethyl+1-[(1R)-1-phenylethyl]-1H-imidazole-5-carboxylate'>V8D</scene></td></tr>

OCA at 04:42, 23 August 2023

2023-08-23T04:42:14Z

← Older revision		Revision as of 04:42, 23 August 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8pvb is ON HOLD		The entry 8pvb is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8pvb" [edit=sysop:move=sysop]

2023-07-26T11:03:06Z

Protected "8pvb" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:03, 26 July 2023
(No difference)

OCA: New page: '''Unreleased structure''' The entry 8pvb is ON HOLD Authors: Description: Category: Unreleased Structures

2023-07-26T11:03:04Z

New page: '''Unreleased structure''' The entry 8pvb is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8pvb is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]