DUTPase 3D structures - Revision history

Michal Harel at 08:02, 2 April 2025

2025-04-02T08:02:25Z

Michal Harel at 08:01, 2 April 2025

2025-04-02T08:01:46Z

← Older revision		Revision as of 08:01, 2 April 2025
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	*DUTP		*DUTP

	11

	**[[1q5u]] - hDUTP – human<br />		**[[1q5u]] - hDUTP – human<br />

Michal Harel at 07:56, 2 April 2025

2025-04-02T07:56:25Z

← Older revision		Revision as of 07:56, 2 April 2025
Line 5:		Line 5:

	*DUTP		*DUTP

			11

	**[[1q5u]] - hDUTP – human<br />		**[[1q5u]] - hDUTP – human<br />

Michal Harel at 09:07, 21 December 2022

2022-12-21T09:07:29Z

← Older revision		Revision as of 09:07, 21 December 2022
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	**[[1q5u]] - hDUTP – human<br />		**[[1q5u]] - hDUTP – human<br />
			**[[7bpd]] - DUTP – pig<br />
	**[[3hhq]] - yDUTP – yeast<br />		**[[3hhq]] - yDUTP – yeast<br />
	**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />		**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />
	**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
	**[[1mq7]] – MtDUTP – ''Mycobacterium tuberculosis''<br />		**[[1mq7]] – MtDUTP – ''Mycobacterium tuberculosis''<br />
	**[[4gk6]] - DUTP – ''Mycobacterium abscessus''<br />		**[[4gk6]] - DUTP – ''Mycobacterium abscessus''<br />
	**[[1ogl]] – TcDUTP – ''Trypanosoma cruzi''<br />		**[[1ogl]] – TcDUTP – ''Trypanosoma cruzi''<br />
	**[[2d4l]] - MPmvDUTP residues 83-234 – Mason_Pfizer monkey virus<br />
	**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
	**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />
	**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />		**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />
	**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />		**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />
Line 25:		Line 22:
	**[[5myi]] - SaDUTP (mutant)<br />		**[[5myi]] - SaDUTP (mutant)<br />
	**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />		**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />
			**[[7n56]] - RpDUTP – ''Rickettsia prowazekii'' <br /
	**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />		**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />
			**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
			**[[2d4l]] - MPmvDUTP residues 83-234 – Mason_Pfizer monkey virus<br />
			**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
			**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />

	*DUTP binary complexes		*DUTP binary complexes
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	**[[2hrm]], [[6hde]] - EcDUTP (mutant) + dUTP derivative<br />		**[[2hrm]], [[6hde]] - EcDUTP (mutant) + dUTP derivative<br />
	**[[1seh]] - EcDUTP + dUMP<br />		**[[1seh]] - EcDUTP + dUMP<br />
	**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
	**[[1ogk]] – TcDUTP + dUTP<br />		**[[1ogk]] – TcDUTP + dUTP<br />
	**[[1smc]] - MtDUTP + dUTP<br />		**[[1smc]] - MtDUTP + dUTP<br />
Line 43:		Line 44:
	**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />		**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />
	**[[2y8c]] - PfDUTP + trityl ligand<br />		**[[2y8c]] - PfDUTP + trityl ligand<br />
	**[[2bsy]], [[2we0]] - EbvDUTP + dUMP – Epstein-Barr virus<br />
	**[[2we1]], [[2we2]] - EbvDUTP (mutant) + dUMP<br />
	**[[2ol1]] - VvDUTP + dUMP<br />
	**[[2y1t]] - BsDUTP + dUDP<br />		**[[2y1t]] - BsDUTP + dUDP<br />
	**[[4ao5]] - BsDUTP + dUMP<br />		**[[4ao5]] - BsDUTP + dUMP<br />
	**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />		**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />
	**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />		**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />
			**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
			**[[6mao]] - LpDUTP + dUMP <br />
			**[[7n6s]] - RpDUTP + dUMP – ''Rickettsia prowazekii'' <br />
			**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
			**[[2bsy]], [[2we0]] - EbvDUTP + dUMP – Epstein-Barr virus<br />
			**[[2we1]], [[2we2]] - EbvDUTP (mutant) + dUMP<br />
			**[[2ol1]] - VvDUTP + dUMP<br />
	**[[3zez]] - SpDUTP + dUTP derivative – ''Staphylococcus'' phage 80a<br />		**[[3zez]] - SpDUTP + dUTP derivative – ''Staphylococcus'' phage 80a<br />
	**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />		**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />
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	**[[4wrk]] - SppDUTP (mutant) + dUTP derivative <br />		**[[4wrk]] - SppDUTP (mutant) + dUTP derivative <br />
	**[[6h4c]] - SppDUTP + Orf20 <br />		**[[6h4c]] - SppDUTP + Orf20 <br />
	**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
	**[[6mao]] - LpDUTP + dUMP <br />
	**[[6lis]], [[6ky9]] - AsfvDUTP + dUMP <br />		**[[6lis]], [[6ky9]] - AsfvDUTP + dUMP <br />
	**[[7n6s]] - DUTP + dUMP – ''Rickettsia prowazekii'' <br />

	*DUTP ternary complexes		*DUTP ternary complexes
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	**[[3ehw]] - hDUTP + Mg + dUTP<br />		**[[3ehw]] - hDUTP + Mg + dUTP<br />
	**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />		**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
			**[[7dlv]] - DUTP + Ca + Orf20 - shrimp<br />
	**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />		**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
	**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />		**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />
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	**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />		**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
	**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />		**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />
			**[[2cje]] - LmDUTP + Mg + dUTP derivative<br />
			**[[2yay]] - LmDUTP + Ca + dUTP derivative<br />
			**[[2yaz]] - LmDUTP + Mg + dUMP<br />
			**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
			**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
			**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />
	**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />		**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />
	**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />		**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />
Line 89:		Line 98:
	**[[3tpw]], [[3tpn]], [[3tps]] - MPmvDUTP catalytic domain (mutant) + Mg + dUTP derivative<br />		**[[3tpw]], [[3tpn]], [[3tps]] - MPmvDUTP catalytic domain (mutant) + Mg + dUTP derivative<br />
	**[[3tpy]], [[3tq3]], [[3tq4]] - MPmvDUTP catalytic domain + Mg + dUMP + dUTP derivative<br />		**[[3tpy]], [[3tq3]], [[3tq4]] - MPmvDUTP catalytic domain + Mg + dUMP + dUTP derivative<br />
	**[[2cje]] - LmDUTP + Mg + dUTP derivative<br />
	**[[2yay]] - LmDUTP + Ca + dUTP derivative<br />
	**[[2yaz]] - LmDUTP + Mg + dUMP<br />
	**[[2oke]] - VvDUTP + Mg + dUTP derivative<br />		**[[2oke]] - VvDUTP + Mg + dUTP derivative<br />
	**[[2ol0]] - VvDUTP + Mg + dUDP<br />		**[[2ol0]] - VvDUTP + Mg + dUDP<br />
	**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />		**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />
	**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />		**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />
	**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
	**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
	**[[6lj3]], [[6ljj]], [[6kz6]] - AsfvDUTP + Mg + dUTP derivative <br />		**[[6lj3]], [[6ljj]], [[6kz6]] - AsfvDUTP + Mg + dUTP derivative <br />
	**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:00, 27 June 2021

2021-06-27T08:00:12Z

← Older revision		Revision as of 08:00, 27 June 2021
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	**[[5myi]] - SaDUTP (mutant)<br />		**[[5myi]] - SaDUTP (mutant)<br />
	**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />		**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />
			**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />

	*DUTP binary complexes		*DUTP binary complexes
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	**[[3f4f]] - yDUTP + dUMP<br />		**[[3f4f]] - yDUTP + dUMP<br />
	**[[1dud]] – EcDUTP + dUDP<br />		**[[1dud]] – EcDUTP + dUDP<br />
	**[[2hrm]], [[6hde]] - EcDUTP + dUTP derivative<br />		**[[2hrm]], [[6hde]] - EcDUTP (mutant) + dUTP derivative<br />
	**[[1seh]] - EcDUTP + dUMP<br />		**[[1seh]] - EcDUTP + dUMP<br />
	**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />		**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
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	**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />		**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />
	**[[5cco]] - SpDUTP + dUMP <br />		**[[5cco]] - SpDUTP + dUMP <br />
	**[[4gv8]] - ~~DUTP~~ + dUTP derivative – ''Staphylococcus'' phage 11<br />		**[[4gv8]] - SppDUTP + dUTP derivative – ''Staphylococcus'' phage 11<br />
	**[[4wrk]] - SppDUTP (mutant) + dUTP derivative ~~– ''Staphylococcus'' phage φ11~~<br />		**[[4wrk]] - SppDUTP (mutant) + dUTP derivative <br />
	**[[6h4c]] - SppDUTP + Orf20 <br />		**[[6h4c]] - SppDUTP + Orf20 <br />
	**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />		**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
	**[[6mao]] - LpDUTP + dUMP <br />		**[[6mao]] - LpDUTP + dUMP <br />
			**[[6lis]], [[6ky9]] - AsfvDUTP + dUMP <br />
			**[[7n6s]] - DUTP + dUMP – ''Rickettsia prowazekii'' <br />

	*DUTP ternary complexes		*DUTP ternary complexes
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	**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />		**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
	**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />		**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
			**[[6lj3]], [[6ljj]], [[6kz6]] - AsfvDUTP + Mg + dUTP derivative <br />
			**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 10:29, 13 July 2020

2020-07-13T10:29:17Z

← Older revision		Revision as of 10:29, 13 July 2020
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	**[[1q5u]] - hDUTP – human<br />		**[[1q5u]] - hDUTP – human<br />
			**[[3hhq]] - yDUTP – yeast<br />
	**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />		**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />
	**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />		**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
Line 15:		Line 16:
	**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />		**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
	**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />		**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />
	**[[3hhq]] - yDUTP – yeast<br />
	**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />		**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />
	**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />		**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />
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	**[[4mz5]], [[4mz6]] – hDUTP + importin subunit α-1<br />		**[[4mz5]], [[4mz6]] – hDUTP + importin subunit α-1<br />
	**[[5h4j]] - hDUTP + inhibitor<br />		**[[5h4j]] - hDUTP + inhibitor<br />
			**[[4ooq]], [[2pc5]] – AtDUTP + Mg – ''Arabidopsis thaliana''<br />
			**[[3f4f]] - yDUTP + dUMP<br />
	**[[1dud]] – EcDUTP + dUDP<br />		**[[1dud]] – EcDUTP + dUDP<br />
	**[[2hrm]] - EcDUTP + dUTP derivative<br />		**[[2hrm]], [[6hde]] - EcDUTP + dUTP derivative<br />
	**[[1seh]] - EcDUTP + dUMP<br />		**[[1seh]] - EcDUTP + dUMP<br />
	**[[3f4f]] - yDUTP + dUMP<br />
	**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />		**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
	**[[1ogk]] – TcDUTP + dUTP<br />		**[[1ogk]] – TcDUTP + dUTP<br />
Line 48:		Line 49:
	**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />		**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />
	**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />		**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />
	**[[~~4ooq~~]]~~, [[2pc5]] – AtDUTP~~ + Mg – ''~~Arabidopsis thaliana~~''<br />		**[[3zez]] - SpDUTP + dUTP derivative – ''Staphylococcus'' phage 80a<br />
	**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative ~~– ''Staphylococcus'' phage 80α~~<br />		**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />
	**[[5cco]] - SpDUTP + dUMP <br />		**[[5cco]] - SpDUTP + dUMP <br />
	**[[4gv8]] - DUTP + dUTP derivative – ''Staphylococcus'' phage 11<br />		**[[4gv8]] - DUTP + dUTP derivative – ''Staphylococcus'' phage 11<br />
	**[[4wrk]] - ~~DUTP~~ (mutant) + dUTP derivative – ''Staphylococcus'' phage φ11<br />		**[[4wrk]] - SppDUTP (mutant) + dUTP derivative – ''Staphylococcus'' phage φ11<br />
			**[[6h4c]] - SppDUTP + Orf20 <br />
	**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />		**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
	**[[6mao]] - LpDUTP + dUMP <br />		**[[6mao]] - LpDUTP + dUMP <br />
Line 58:		Line 60:
	*DUTP ternary complexes		*DUTP ternary complexes

			**[[2hqu]] - hDUTP + Mg + dUTP derivative <br />
			**[[1q5h]] - hDUTP + Mg + dUDP<br />
			**[[3ehw]] - hDUTP + Mg + dUTP<br />
			**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
			**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
			**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />
			**[[3p48]] - yDUTP + Mg + dUTP derivative<br />
	**[[1duc]] – EvDUPT + Sr + dUTP<br />		**[[1duc]] – EvDUPT + Sr + dUTP<br />
	**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />
	**[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative<br />
	**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
	**[[1rn8]] - EcDUTP + Mg + dUTP derivative<br />		**[[1rn8]] - EcDUTP + Mg + dUTP derivative<br />
	**[[1rnj]] - EcDUTP (mutant) + Mg + dUTP derivative<br />		**[[1rnj]] - EcDUTP (mutant) + Mg + dUTP derivative<br />
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	**[[1sm8]] – MtDUTP + Cr + dUTP<br />		**[[1sm8]] – MtDUTP + Cr + dUTP<br />
	**[[1snf]] - MtDUTP + Mg + dUMP<br />		**[[1snf]] - MtDUTP + Mg + dUMP<br />
			**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />
			**[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative<br />
			**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
	**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />		**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />
	**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />
	**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />		**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />
	**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />		**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />
Line 85:		Line 93:
	**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />		**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />
	**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />		**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />
	**[[2hqu]] - hDUTP + Mg + dUTP derivative <br />
	**[[1q5h]] - hDUTP + Mg + dUDP<br />
	**[[3ehw]] - hDUTP + Mg + dUTP<br />
	**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
	**[[3p48]] - yDUTP + Mg + dUTP derivative<br />
	**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />		**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
	**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
	**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />		**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel: New page: ==3D structures of dUTPase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *DUTP **1q5u - hDUTP – human
2019-06-05T08:57:12Z

New page: ==3D structures of dUTPase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *DUTP 1q5u - hDUTP – human<br...

New page**
==3D structures of dUTPase==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*DUTP

[[1q5u]] - hDUTP – human 
[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli'' 
[[1dun]] – EvDUTP – Equine infectious anemia virus 
[[1mq7]] – MtDUTP – ''Mycobacterium tuberculosis'' 
[[4gk6]] - DUTP – ''Mycobacterium abscessus'' 
[[1ogl]] – TcDUTP – ''Trypanosoma cruzi'' 
[[2d4l]] - MPmvDUTP residues 83-234 – Mason_Pfizer monkey virus 
[[2d4m]] - MPmvDUTP residues 83-234 (mutant) 
[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus 
[[3hhq]] - yDUTP – yeast 
[[3lqw]] - DUTP – ''Entamoeba histolytica'' 
[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis'' 
[[2xx6]] - BsDUTP – ''Bacillus subtilis'' 
[[3tqz]] - DUTP – ''Coxiella burnetii'' 
[[4lhr]] - DUTP – ''Burkholderia thailandensis'' 
[[3h6x]] - DUTP – ''Streptococcus mutans'' 
[[5myf]] - SaDUTP – ''Staphylococcus aureus'' 
[[5myi]] - SaDUTP (mutant) 
**[[6mai]] - LpDUTP – ''Legionella pneumophila'' 

*DUTP binary complexes

[[4mz5]], [[4mz6]] – hDUTP + importin subunit α-1 
[[5h4j]] - hDUTP + inhibitor 
[[1dud]] – EcDUTP + dUDP 
[[2hrm]] - EcDUTP + dUTP derivative 
[[1seh]] - EcDUTP + dUMP 
[[3f4f]] - yDUTP + dUMP 
[[1dut]] – DUTP + Mg – Feline immunodeficiency virus 
[[1ogk]] – TcDUTP + dUTP 
[[1smc]] - MtDUTP + dUTP 
[[4gcy]] - MtDUTP (mutant) + dUTP 
[[4a6a]] - MtDUTP (mutant) + dTTP 
[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum'' 
[[2y8c]] - PfDUTP + trityl ligand 
[[2bsy]], [[2we0]] - EbvDUTP + dUMP – Epstein-Barr virus 
[[2we1]], [[2we2]] - EbvDUTP (mutant) + dUMP 
[[2ol1]] - VvDUTP + dUMP 
[[2y1t]] - BsDUTP + dUDP 
[[4ao5]] - BsDUTP + dUMP 
[[2yb0]] - LmDUTP + dU – ''Leishmania major'' 
[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP 
[[4ooq]], [[2pc5]] – AtDUTP + Mg – ''Arabidopsis thaliana'' 
[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative – ''Staphylococcus'' phage 80α 
[[5cco]] - SpDUTP + dUMP 
[[4gv8]] - DUTP + dUTP derivative – ''Staphylococcus'' phage 11 
[[4wrk]] - DUTP (mutant) + dUTP derivative – ''Staphylococcus'' phage φ11 
[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' 
**[[6mao]] - LpDUTP + dUMP 

*DUTP ternary complexes

[[1duc]] – EvDUPT + Sr + dUTP 
[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative 
[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative 
[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative 
[[1rn8]] - EcDUTP + Mg + dUTP derivative 
[[1rnj]] - EcDUTP (mutant) + Mg + dUTP derivative 
[[1syl]] - EcDUTP (mutant) + Mg + dUTP 
[[2hr6]] - EcDUTP + Mn + dUDP 
[[1slh]] – MtDUTP + Mg + dUDP 
[[5ect]], [[5edd]] - MtDUTP (mutant) + Mg + dUTP derivative 
[[1sm8]] – MtDUTP + Cr + dUTP 
[[1snf]] - MtDUTP + Mg + dUMP 
[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni'' 
[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold 
[[2bt1]] - EbvDUTP + Mg + dUTP derivative 
[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP 
[[2d4n]] - MPmvDUTP residues 83-234 (mutant) + Mg + dUTP derivative 
[[3tp1]] - MPmvDUTP catalytic domain + Mg + dUTP derivative 
[[3tpw]], [[3tpn]], [[3tps]] - MPmvDUTP catalytic domain (mutant) + Mg + dUTP derivative 
[[3tpy]], [[3tq3]], [[3tq4]] - MPmvDUTP catalytic domain + Mg + dUMP + dUTP derivative 
[[2cje]] - LmDUTP + Mg + dUTP derivative 
[[2yay]] - LmDUTP + Ca + dUTP derivative 
[[2yaz]] - LmDUTP + Mg + dUMP 
[[2oke]] - VvDUTP + Mg + dUTP derivative 
[[2ol0]] - VvDUTP + Mg + dUDP 
[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus 
[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP 
[[2hqu]] - hDUTP + Mg + dUTP derivative 
[[1q5h]] - hDUTP + Mg + dUDP 
[[3ehw]] - hDUTP + Mg + dUTP 
[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative 
[[3p48]] - yDUTP + Mg + dUTP derivative 
[[2xy3]] - BsDUTP + Mg + dUTP derivative 
[[4oop]] - AtDUTP + Mg + dUTP derivative 
**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine 
}}

[[Category:Topic Page]]

← Older revision		Revision as of 08:02, 2 April 2025
Line 22:		Line 22:
	**[[5myi]] - SaDUTP (mutant)<br />		**[[5myi]] - SaDUTP (mutant)<br />
	**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />		**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />
	**[[7n56]] - RpDUTP – ''Rickettsia prowazekii'' <br /		**[[7n56]] - RpDUTP – ''Rickettsia prowazekii'' <br />
			**[[8k6w]] - HpDUTP – ''Helicobacter pylori''<br />
	**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />		**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />
	**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />		**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
Line 28:		Line 29:
	**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />		**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
	**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />		**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />
			**[[8qky]], [[8qld]] - DUTP (mutant) – Escherichia phage T5<br />

	*DUTP binary complexes		*DUTP binary complexes
Line 42:		Line 44:
	**[[4gcy]] - MtDUTP (mutant) + dUTP<br />		**[[4gcy]] - MtDUTP (mutant) + dUTP<br />
	**[[4a6a]] - MtDUTP (mutant) + dTTP<br />		**[[4a6a]] - MtDUTP (mutant) + dTTP<br />
			**[[8p8o]] - MtDUTP + Orf20 <br />
	**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />		**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />
	**[[2y8c]] - PfDUTP + trityl ligand<br />		**[[2y8c]] - PfDUTP + trityl ligand<br />
Line 69:		Line 72:
	**[[3ehw]] - hDUTP + Mg + dUTP<br />		**[[3ehw]] - hDUTP + Mg + dUTP<br />
	**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />		**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
			**[[8c8i]] - hDUTP + Mg + Orf20 <br />
	**[[7dlv]] - DUTP + Ca + Orf20 - shrimp<br />		**[[7dlv]] - DUTP + Ca + Orf20 - shrimp<br />
	**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />		**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
Line 83:		Line 87:
	**[[1snf]] - MtDUTP + Mg + dUMP<br />		**[[1snf]] - MtDUTP + Mg + dUMP<br />
	**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />		**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />
	**[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative<br />		**[[3h6d]], [[3hza]], [[3i93]], [[8cga]] - MtDUTP (mutant) + Mg + dUTP derivative<br />
	**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />		**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
	**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />		**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />
Line 92:		Line 96:
	**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />		**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
	**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />		**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />
			**[[8hrv]] - HpDUTP + Mg + dUTP
			**[[8y1q]] - DUTP + Mg + dUMP – ''Aquifex aeolicus''
	**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />		**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />
	**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />		**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />