GTP-binding protein 3D structures - Revision history

Joel L. Sussman at 09:09, 6 August 2025

2025-08-06T09:09:46Z

← Older revision		Revision as of 09:09, 6 August 2025
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	**[[5jlj]] – hRan + Ran-specific GTPase-activating protein + exportin 1 + GNP + inhibitor<br />		**[[5jlj]] – hRan + Ran-specific GTPase-activating protein + exportin 1 + GNP + inhibitor<br />
	**[[4wvf]] – hRan + Ran-specific GTPase-activating protein + CRM1P + GNP + inhibitor<br />		**[[4wvf]] – hRan + Ran-specific GTPase-activating protein + CRM1P + GNP + inhibitor<br />
	**[[6cit]], [[~~6kft~~]] – hRan + Ran-specific GTPase-activating protein + exportin + NS2 + GNP<br />		**[[6cit]], [[9vm1]] – hRan + Ran-specific GTPase-activating protein + exportin + NS2 + GNP<br />
	**[[6x2r]] – hRan + Ran-specific GTPase-activating protein + exportin + Eif4E + GNP<br />		**[[6x2r]] – hRan + Ran-specific GTPase-activating protein + exportin + Eif4E + GNP<br />
	**[[6x2u]], [[6x2v]], [[6x2w]] – hRan + Ran-specific GTPase-activating protein + exportin + Pki-alpha peptide + GNP<br />		**[[6x2u]], [[6x2v]], [[6x2w]] – hRan + Ran-specific GTPase-activating protein + exportin + Pki-alpha peptide + GNP<br />

Michal Harel at 08:13, 3 August 2025

2025-08-03T08:13:24Z

← Older revision		Revision as of 08:13, 3 August 2025
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	**[[5aa0]] – TtNGBP 1 in 50S ribosome – Cryo EM<br />		**[[5aa0]] – TtNGBP 1 in 50S ribosome – Cryo EM<br />
	**[[9bs0]], [[9bsl]], [[9bss]] – BsNGBP 1 in 50S ribosome – Cryo EM<br />		**[[9bs0]], [[9bsl]], [[9bss]] – BsNGBP 1 in 50S ribosome – Cryo EM<br />
	**[[6yxx]] – NGBP 1 in 12S mitoribosome – Trypanosoma brucei - Cryo EM<br />		**[[6yxx]] – NGBP 1 in 12S mitoribosome – ''Trypanosoma brucei'' - Cryo EM<br />
	**[[8a57]] – NGBP in 50S ribosome – Listeria monocytogenes - Cryo EM<br />		**[[8a57]] – NGBP in 50S ribosome – ''Listeria monocytogenes'' - Cryo EM<br />
	**[[8uua]] – NGBP in 50S ribosome – Listeria innocua - Cryo EM<br />		**[[8uua]] – NGBP in 50S ribosome – ''Listeria innocua'' - Cryo EM<br />
	**[[8vk0]], [[8vk7]], [[8vki]], [[8vkw]], [[8vpk]], [[8vr4]], [[8vr8]], [[8vrl]] – MsNGBP in 50S ribosome – Mycobacterium smegmatis - Cryo EM<br />		**[[8vk0]], [[8vk7]], [[8vki]], [[8vkw]], [[8vpk]], [[8vr4]], [[8vr8]], [[8vrl]] – MsNGBP in 50S ribosome – ''Mycobacterium smegmatis'' - Cryo EM<br />
	**[[8vio]] – MsNGBP 1 in 70S ribosome – Cryo EM<br />		**[[8vio]] – MsNGBP 1 in 70S ribosome – Cryo EM<br />
	**[[8i9r]], [[8i9t]], [[8i9v]], [[8i9w]], [[8i9x]], [[8i9y]], [[8i9z]], [[8ia0]], [[8pv1]], [[8pv2]], [[8pv3]], [[8pv4]], [[8pv5]], [[8pv6]], [[8pv7]], [[8pv8]], [[8pvk]], [[8pvl]] – NGBP 1 in pre-60S ribosome – Chaetomium thermophilum - Cryo EM<br />		**[[8i9r]], [[8i9t]], [[8i9v]], [[8i9w]], [[8i9x]], [[8i9y]], [[8i9z]], [[8ia0]], [[8pv1]], [[8pv2]], [[8pv3]], [[8pv4]], [[8pv5]], [[8pv6]], [[8pv7]], [[8pv8]], [[8pvk]], [[8pvl]] – NGBP 1 in pre-60S ribosome – ''Chaetomium thermophilum'' - Cryo EM<br />

	*'''Small GTPase h-Ras''' see [[GTPase HRas]]		*'''Small GTPase h-Ras''' see [[GTPase HRas]]

Michal Harel at 08:11, 3 August 2025

2025-08-03T08:11:47Z

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Michal Harel at 09:06, 30 June 2024

2024-06-30T09:06:07Z

← Older revision		Revision as of 09:06, 30 June 2024
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	**[[2l0x]] – rRheb + GDP<br />		**[[2l0x]] – rRheb + GDP<br />

	*Nucleolar GTP-binding protein 1		*'''Nucleolar GTP-binding protein 1'''

	**[[7o9k]], [[7o9m]], [[7odt]], [[7of2]], [[7of4]], [[7of6]], [[7of7]], [[7oi6]], [[7pd3]] – hNGBP 1 in 39S mitoribosome – Cryo EM<br />		**[[7o9k]], [[7o9m]], [[7odt]], [[7of2]], [[7of4]], [[7of6]], [[7of7]], [[7oi6]], [[7pd3]] – hNGBP 1 in 39S mitoribosome – Cryo EM<br />

Michal Harel at 09:05, 30 June 2024

2024-06-30T09:05:15Z

← Older revision		Revision as of 09:05, 30 June 2024
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	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|

	'''*Small GTP-binding protein'''		*'''Small GTP-binding protein'''

	**[[2eki]] – hGBP TGS domain – NMR – human<br />		**[[2eki]] – hGBP TGS domain – NMR – human<br />

Michal Harel at 09:03, 30 June 2024

2024-06-30T09:03:37Z

← Older revision		Revision as of 09:03, 30 June 2024
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	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|

	*GTP-binding protein		'''*Small GTP-binding protein'''

	**[[2eki]] – hGBP TGS domain – NMR – human<br />		**[[2eki]] – hGBP TGS domain – NMR – human<br />

Michal Harel at 10:41, 23 April 2023

2023-04-23T10:41:02Z

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Joel L. Sussman at 03:36, 30 May 2022

2022-05-30T03:36:50Z

← Older revision		Revision as of 03:36, 30 May 2022
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	**[[3rwm]], [[3rwo]] – yPt32 + GPPNHP<br />		**[[3rwm]], [[3rwo]] – yPt32 + GPPNHP<br />
	**[[1ek0]] – yPt51 + GPPNHP<br />		**[[1ek0]] – yPt51 + GPPNHP<br />
	**[[2hjg]], [[4dcs]], [[4dct]], [[4dcu]], [[4dcv]], [[~~4kyu~~]], [[5mbs]] – BsEngA + GDP<br />		**[[2hjg]], [[4dcs]], [[4dct]], [[4dcu]], [[4dcv]], [[5x4b]], [[5mbs]] – BsEngA + GDP<br />
	**[[5m7h]] – BsEngA + GMPPNP<br />		**[[5m7h]] – BsEngA + GMPPNP<br />
	**[[5x4b]] – BsEngA N-terminal + GDP<br />		**[[5x4b]] – BsEngA N-terminal + GDP<br />

Michal Harel at 10:13, 18 August 2021

2021-08-18T10:13:21Z

← Older revision		Revision as of 10:13, 18 August 2021
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	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|

	*~~'''Small~~ GTP-binding protein~~'''~~		*GTP-binding protein

	**[[2eki]] – hGBP TGS domain – NMR - human<br />		**[[2eki]] – hGBP TGS domain – NMR – human<br />
	**[[3r7w]], [[4arz]] – yGtr1 + Gtr2 – yeast<br />		**[[3r7w]], [[4arz]] – yGtr1 + Gtr2 – yeast<br />
	**[[3kxk]], [[3kxl]] – SsHflx (mutant) - ''Sulfolobus solfataricus''<br />		**[[3kxk]], [[3kxl]] – SsHflx (mutant) - ''Sulfolobus solfataricus''<br />
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	**[[1m2o]] – ySar1 + protein transport protein sec23<br />		**[[1m2o]] – ySar1 + protein transport protein sec23<br />
	**[[6gni]] - ySar1 + protein transport protein sec23 + Sec24 + GNP<br />		**[[6gni]] - ySar1 + protein transport protein sec23 + Sec24 + GNP<br />
	**[[~~6gwp~~]] – yGtr1 + Gtr2 + Meh1 + Ego2 + Slm4 + GNP<br />		**[[6jwp]] – yGtr1 + Gtr2 + Meh1 + Ego2 + Slm4 + GNP<br />
	**[[3syn]] – BsFlhf + ATP-binding protein<br />		**[[3syn]] – BsFlhf + ATP-binding protein<br />

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	**[[4idn]] – hGDP3 cytoplasmic domain + GNP<br />		**[[4idn]] – hGDP3 cytoplasmic domain + GNP<br />
	**[[4ido]], [[4idq]], [[3q5d]], [[3q5e]], [[3qnu]], [[3qof]] – hGDP3 cytoplasmic domain + GDP<br />		**[[4ido]], [[4idq]], [[3q5d]], [[3q5e]], [[3qnu]], [[3qof]], [[6b9g]], [[6xjn]], [[7ol3]] – hGDP3 cytoplasmic domain + GDP<br />
	**[[6b9f]], [[6b9e]], [[6b9d]] – hGDP3 cytoplasmic domain (mutant) + GDP<br />		**[[6b9f]], [[6b9e]], [[6b9d]] – hGDP3 cytoplasmic domain (mutant) + GDP<br />

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	**[[1yu9]] - hRab-4A + GPPNHP<br />		**[[1yu9]] - hRab-4A + GPPNHP<br />
	**[[1yzq]] - hRab-6 + GNP<br />		**[[1yzq]] - hRab-6 + GNP<br />
			**[[6hh2]] – hRab-7L1 + GDP<br />
	**[[1x3s]] – hRab-18 + GPPNHP		**[[1x3s]] – hRab-18 + GPPNHP
	**[[6huf]] - hRab-27A + GNP<br />		**[[6huf]] - hRab-27A + GNP<br />
			**[[6ff8]] - hRab-32 + GTP<br />
			**[[6hdu]], [[6s5h]] - hRab-38 + GTP<br />
	**[[6s6a]], [[6s6d]] - hRagA (mutant) + RagC (mutant) + GDP + GTP<br />		**[[6s6a]], [[6s6d]] - hRagA (mutant) + RagC (mutant) + GDP + GTP<br />
	**[[2atx]] – hTc10 + GPPNHP<br />		**[[2atx]] – hTc10 + GPPNHP<br />
	**[[1g16]] – ySec4 + GDP<br />		**[[1g16]] – ySec4 + GDP<br />
	**[[1g17]] - ySec4 + GIP<br />		**[[1g17]] - ySec4 + GIP<br />
			**[[6o62]] – Sec4 + GDP – ''Candida albicans''<br />

	*Ras-related small GTP-binding protein complex with protein		*Ras-related small GTP-binding protein complex with protein
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	**[[5kho]] – hRab-1B + Ras-interacting protein 1<br />		**[[5kho]] – hRab-1B + Ras-interacting protein 1<br />
	**[[4mh0]], [[4mgz]], [[4mgy]], [[4mgk]], [[4mgi]] - hRap-1B + Rap guanine nucleotide exchange factor 4<br />		**[[4mh0]], [[4mgz]], [[4mgy]], [[4mgk]], [[4mgi]] - hRap-1B + Rap guanine nucleotide exchange factor 4<br />
			**[[6sku]] – hRab-1B + phosphocholine transferase + GDP<br />
			**[[6sq2]] – hRab-8A + RILPL2 + GTP<br />
	**[[1z0k]] – hRab-4 + rabenosyn-5<br />		**[[1z0k]] – hRab-4 + rabenosyn-5<br />
	**[[3tw8]] – hRab-1C + DENND<br />		**[[3tw8]] – hRab-1C + DENND<br />
	**[[4ojk]] – hRab-11B + cGMP-dependent protein kinase 2<br />		**[[4ojk]] – hRab-11B + cGMP-dependent protein kinase 2<br />
			**[[6zay]] – hRab-33B + autophagy-related protein + GDP<br />
	**[[6ekk]] – hRab-35 + connecdenn + GDP<br />		**[[6ekk]] – hRab-35 + connecdenn + GDP<br />
	**[[6if2]] – hRab-35 (mutant) + iporin + GTP<br />		**[[6if2]] – hRab-35 (mutant) + iporin + GTP<br />
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	**[[6ehr]], [[5x6v]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5<br />		**[[6ehr]], [[5x6v]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5<br />
	**[[6u62]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5 + GTP + GDP – Cryo EM<br />		**[[6u62]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5 + GTP + GDP – Cryo EM<br />
			**[[6wj2]], [[6wj3]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5 + GDP – Cryo EM<br />
	**[[6nzd]], [[6ulg]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5 + folliculin + folliculin-interacting protein + GDP – Cryo EM<br />		**[[6nzd]], [[6ulg]] – hRag-A + hRag-C + lamtor1 + lamtor2 + lamtor3 + lamtor4 + lamtor5 + folliculin + folliculin-interacting protein + GDP – Cryo EM<br />
	**[[6sb2]] – hRag-A + hRag-C + Mtor + Torc + Raptor + GDP + GTP – Cryo EM<br />		**[[6sb2]] – hRag-A + hRag-C + Mtor + Torc + Raptor + GDP + GTP – Cryo EM<br />
	**[[6sb0]] – hRag-A + hRag-C + Mtor + Torc + Raptor + Pro-rich Akt1 substrate + GDP + GTP – Cryo EM<br />		**[[6sb0]] – hRag-A + hRag-C + Mtor + Torc + Raptor + Pro-rich Akt1 substrate + GDP + GTP – Cryo EM<br />
	**[[6oq3]], [[6oq4]] – hRap-1B + krev interacting trapped protein + GNP<br />		**[[6oq3]], [[6oq4]] – hRap-1B + krev interacting trapped protein + GNP<br />
			**[[6sur]], [[6y09]] – mRab-33B (mutant) + autophagy-related protein + GTP<br />

	*'''Interferon-induced GTP-binding protein'''		*'''Interferon-induced GTP-binding protein'''
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	*Rho-related small GTP-binding protein complex with nucleotide		*Rho-related small GTP-binding protein complex with nucleotide

			**[[6d71]] – hRho1 + GTP<br />
	**[[2cls]] – hRho6 + GTP<br />		**[[2cls]] – hRho6 + GTP<br />
	**[[2fv8]] - hRhoB + GDP<br />		**[[2fv8]] - hRhoB + GDP<br />
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	**[[6bca]] - hRhoA + kinase anchor protein + GTP<br />		**[[6bca]] - hRhoA + kinase anchor protein + GTP<br />
	**[[6sge]] - hRhoB + nanobody + GTP<br />		**[[6sge]] - hRhoB + nanobody + GTP<br />
			**[[6uka]] - hRhoG + ELMO + GNP<br />
	**[[3a58]] – yRho1 (mutant) + exocyst complex component Sec3 + cancidas<br />		**[[3a58]] – yRho1 (mutant) + exocyst complex component Sec3 + cancidas<br />

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	**[[3ieu]] – EcERA + GDP <br />		**[[3ieu]] – EcERA + GDP <br />
	**[[3iev]] – AaERA + RNA + Mg-GNP <br />		**[[3iev]] – AaERA + RNA + Mg-GNP <br />
			**[[7c1o]] – AaERA + GDP <br />
	**[[1x1l]] – TtERA + RNA – Cryo EM<br />		**[[1x1l]] – TtERA + RNA – Cryo EM<br />
	**[[1x18]] – TtERA + RNA + RPS2 + RPS7 + RPS11 + RPS18 – Cryo EM<br />		**[[1x18]] – TtERA + RNA + RPS2 + RPS7 + RPS11 + RPS18 – Cryo EM<br />

Michal Harel at 09:52, 18 August 2021

2021-08-18T09:52:39Z

@@ Line 33: / Line 33: @@
 **[[2bc9]] - hGBP N terminal + GPPNHP<br />
 **[[2gao]] - hSar1A + GDP<br />
 **[[2fa9]] – ChSar1B (mutant) + GDP – Chinese hamster<br />
 **[[2fmx]] - ChSar1B + GDP<br />
@@ Line 58: / Line 60: @@
 **[[1yr9]], [[1yra]], [[1yrb]], [[2oxr]] – PaGBP + GDP<br />
 **[[3kxi]], [[2qth]] – SsHflx + GDP<br />
 *GTP-binding protein complex with protein
 **[[3cue]] – yPt1 + transport protein subunits<br />
 **[[2bcg]], [[1ukv]] - yPt1 + secretory pathway GDP-dissociation inhibitor<br />