Pore Formation - Revision history

Michal Harel at 08:17, 21 August 2011

2011-08-21T08:17:31Z

← Older revision		Revision as of 08:17, 21 August 2011
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	[[Colicin V]]<br>		[[Colicin V]]<br>
	[[Colicin Y]]		[[Colicin Y]]

			==3D structures of colicin==

			[[Colicin]]


	==References==		==References==
	<references/>		<references/>

Gemma McGoldrick: /* Pore-forming Colicins */

2011-03-27T14:58:00Z

Pore-forming Colicins

← Older revision		Revision as of 14:58, 27 March 2011
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	==Pore-forming Colicins==		==Pore-forming Colicins==

	[[Colicin A]]		[[Colicin A]]<br>
	[[Colicin E1]]		[[Colicin E1]]<br>
	[[Colicin N]]		[[Colicin N]]<br>
	[[Colicin S4]]		[[Colicin S4]]<br>
	[[Colicin K]]		[[Colicin K]]<br>
	[[Colicin U]]		[[Colicin U]]<br>
	[[Colicin 5]]		[[Colicin 5]]<br>
	[[Colicin 6]]		[[Colicin 6]]<br>
	[[Colicin 7]]		[[Colicin 7]]<br>
	[[Colicin 8]]		[[Colicin 8]]<br>
	[[Colicin 9]]		[[Colicin 9]]<br>
	[[Colicin 10]]		[[Colicin 10]]<br>
	[[Colicin Ia]]		[[Colicin Ia]]<br>
	[[Colicin Ib]]		[[Colicin Ib]]<br>
	[[Colicin B]]		[[Colicin B]]<br>
	[[Colicin V]]		[[Colicin V]]<br>
	[[Colicin Y]]		[[Colicin Y]]

	==References==		==References==
	<references/>		<references/>

Gemma McGoldrick at 14:57, 27 March 2011

2011-03-27T14:57:30Z

@@ Line 22: / Line 22: @@
 After binding to the membrane, the pore-forming domain unfolds and releases the hydrophobic helices to initiate insertion. This unfolding is shown to be linked to a low pH. 3 conserved aspartate residues in the domain form a hydrogen-bonding domain which is disrupted by the low pH, as is a critical salt bridge required for stability of the folded protein. This causes local unfolding of a helix. The helices then loosely associate on the surface of the membrane, as the hydrophobic hairpin inserts into the bilayer<ref> PMID: 16563740 </ref>.
 ==References==
 <references/>

Gemma McGoldrick at 16:01, 13 February 2011

2011-02-13T16:01:38Z

← Older revision		Revision as of 16:01, 13 February 2011
Line 1:		Line 1:
	~~==Introduction==~~		Many [[Colicin]]s produced by ''E. coli'' cells kill other ''E. coli'' cells through the formation of a pore in the membrane of the cell. This kills the cell that is targeted by disrupting the ionic gradient of the cell<ref> PMID: 17724148 </ref>. The colicins that target their cells in this way are known as lysis proteins, as they lyse the target cell<ref> PMID: 9245818 </ref>.
			Colicins are alpha-pore forming toxins, where they form a channel of alpha-helices. The pores formed leak ions, which depolarises the membrane of the targeted cell, and causing cell death<ref> PMID: 16563740 </ref>. The activity of these channel-forming colicins is largest ''in vitro'' at an acidic ambient pH<ref> PMID: 19560438 </ref>.
	Many ~~colicins~~ produced by ''E. coli'' cells kill other ''E. coli'' cells through the formation of a pore in the membrane of the cell. This kills the cell that is targeted by disrupting the ionic gradient of the cell. <ref> PMID: 17724148 </ref> The colicins that target their cells in this way are known as lysis proteins, as they lyse the target cell. <ref> PMID: 9245818 </ref>		The colicins that have this pore-forming domain are [[Colicin A]], [[Colicin Ia]], [[Colicin E1]], [[Colicin N]] and [[Colicin B]].
	Colicins are alpha-pore forming toxins, where they form a channel of alpha-helices. The pores formed leak ions, which depolarises the membrane of the targeted cell, and causing cell death<ref> PMID: 16563740 </ref>. The activity of these channel-forming colicins is largest ''in vitro'' at an acidic ambient pH. <ref> PMID: 19560438 </ref>

	==Production and formation==		==Production and formation==

	Colicin lysis proteins are present in a colicin operon, alongside a regulatory gene called ''cal''. The ''cal'' gene product has a self-regulatory role, whereby it exerts a positive effect on its own synthesis. As it is within the same operon as the lysis protein and the rest of the colicin, it also up-regulates synthesis of these. <ref> PMID: 9245818 </ref>		Colicin lysis proteins are present in a colicin operon, alongside a regulatory gene called ''cal''. The ''cal'' gene product has a self-regulatory role, whereby it exerts a positive effect on its own synthesis. As it is within the same operon as the lysis protein and the rest of the colicin, it also up-regulates synthesis of these<ref> PMID: 9245818 </ref>.

	==Structure==		==Structure==
Line 16:		Line 15:
	The structure of these bacterial toxins challenge the notions that protein sequence determines the unique 3D structure, and that membrane and soluble proteins are very distinct. Colicins are able to transform from soluble monomeric proteins to oligomers that form transmembrane channels.		The structure of these bacterial toxins challenge the notions that protein sequence determines the unique 3D structure, and that membrane and soluble proteins are very distinct. Colicins are able to transform from soluble monomeric proteins to oligomers that form transmembrane channels.

	The structure of the pore state is still unclear. Discovery of the structure is problematic, as the helices are too short to span a standard bilayer. The current theoretical model is that of the toroidal lipidic pore. In this, the protein exerts a detergent-like action, inducing a high curvature in the bilayer. These pores are characterised by their sensitivity to lipids that alter the curvature of the membrane. This curved region of the membrane could then be lined by helices that are shorter than could normally cross the bilayer.		The structure of the pore state is still unclear. Discovery of the structure is problematic, as the helices are too short to span a standard bilayer. The current theoretical model is that of the toroidal lipidic pore. In this, the protein exerts a detergent-like action, inducing a high curvature in the bilayer. These pores are characterised by their sensitivity to lipids that alter the curvature of the membrane. This curved region of the membrane could then be lined by helices that are shorter than could normally cross the bilayer<ref> PMID: 16563740 </ref>.

	<ref> PMID: 16563740 </ref>

	==Membrane insertion==		==Membrane insertion==
Line 24:		Line 21:
	3 stages are involved in the insertion of the pore-forming region of colicins into the membrane of the target cell: Binding, Unfolding and Insertion.		3 stages are involved in the insertion of the pore-forming region of colicins into the membrane of the target cell: Binding, Unfolding and Insertion.

	After binding to the membrane, the pore-forming domain unfolds and releases the hydrophobic helices to initiate insertion. This unfolding is shown to be linked to a low pH. 3 conserved aspartate residues in the domain form a hydrogen-bonding domain which is disrupted by the low pH, as is a critical salt bridge required for stability of the folded protein. This causes local unfolding of a helix. The helices then loosely associate on the surface of the membrane, as the hydrophobic hairpin inserts into the bilayer.		After binding to the membrane, the pore-forming domain unfolds and releases the hydrophobic helices to initiate insertion. This unfolding is shown to be linked to a low pH. 3 conserved aspartate residues in the domain form a hydrogen-bonding domain which is disrupted by the low pH, as is a critical salt bridge required for stability of the folded protein. This causes local unfolding of a helix. The helices then loosely associate on the surface of the membrane, as the hydrophobic hairpin inserts into the bilayer<ref> PMID: 16563740 </ref>.

	<ref> PMID: 16563740 </ref>

	==References==		==References==
	<references/>		<references/>

Gemma McGoldrick: New page: ==Introduction== Many colicins produced by ''E. coli'' cells kill other ''E. coli'' cells through the formation of a pore in the membrane of the cell. This kills the cell that is targeted...

2011-01-23T16:01:33Z

New page: ==Introduction== Many colicins produced by ''E. coli'' cells kill other ''E. coli'' cells through the formation of a pore in the membrane of the cell. This kills the cell that is targeted...

New page

==Introduction==

Many colicins produced by ''E. coli'' cells kill other ''E. coli'' cells through the formation of a pore in the membrane of the cell. This kills the cell that is targeted by disrupting the ionic gradient of the cell. <ref> PMID: 17724148 </ref> The colicins that target their cells in this way are known as lysis proteins, as they lyse the target cell. <ref> PMID: 9245818 </ref>
Colicins are alpha-pore forming toxins, where they form a channel of alpha-helices. The pores formed leak ions, which depolarises the membrane of the targeted cell, and causing cell death<ref> PMID: 16563740 </ref>. The activity of these channel-forming colicins is largest ''in vitro'' at an acidic ambient pH. <ref> PMID: 19560438 </ref>

==Production and formation==

Colicin lysis proteins are present in a colicin operon, alongside a regulatory gene called ''cal''. The ''cal'' gene product has a self-regulatory role, whereby it exerts a positive effect on its own synthesis. As it is within the same operon as the lysis protein and the rest of the colicin, it also up-regulates synthesis of these. <ref> PMID: 9245818 </ref>

==Structure==

The pore-forming domains of colicins are globular and formed of 10 alpha helices. Two hydrophobic helices form the core of the channel, making a hydrophobic helical hairpin that inserts into the membrane during the early stage of pore-formation. These pore forming regions are initially folded up on the surface of the soluble precursors, which unfold at the membrane.

Structures have been determined for the pore-forming domains for [[Colicin A]] and [[Colicin E1]], along with complete structures for [[Colicin Ia]], [[Colicin B]] and [[Colicin N]].

The structure of these bacterial toxins challenge the notions that protein sequence determines the unique 3D structure, and that membrane and soluble proteins are very distinct. Colicins are able to transform from soluble monomeric proteins to oligomers that form transmembrane channels.

The structure of the pore state is still unclear. Discovery of the structure is problematic, as the helices are too short to span a standard bilayer. The current theoretical model is that of the toroidal lipidic pore. In this, the protein exerts a detergent-like action, inducing a high curvature in the bilayer. These pores are characterised by their sensitivity to lipids that alter the curvature of the membrane. This curved region of the membrane could then be lined by helices that are shorter than could normally cross the bilayer.

<ref> PMID: 16563740 </ref>

==Membrane insertion==

3 stages are involved in the insertion of the pore-forming region of colicins into the membrane of the target cell: Binding, Unfolding and Insertion.

After binding to the membrane, the pore-forming domain unfolds and releases the hydrophobic helices to initiate insertion. This unfolding is shown to be linked to a low pH. 3 conserved aspartate residues in the domain form a hydrogen-bonding domain which is disrupted by the low pH, as is a critical salt bridge required for stability of the folded protein. This causes local unfolding of a helix. The helices then loosely associate on the surface of the membrane, as the hydrophobic hairpin inserts into the bilayer.

<ref> PMID: 16563740 </ref>

==References==
<references/>