Protein Data Bank - Revision history

Eric Martz at 22:55, 25 July 2026

2026-07-25T22:55:39Z

← Older revision		Revision as of 22:55, 25 July 2026
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	The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF><REF>PMID:10089483</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB had three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka). In 2022, Protein Data Bank China (PDBc) became an Associate Member.		The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF><REF>PMID:10089483</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB had three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka). In 2022, Protein Data Bank China (PDBc, Shanghai) became an Associate Member.

	==New Releases Cycle==		==New Releases Cycle==

Eric Martz at 22:52, 25 July 2026

2026-07-25T22:52:38Z

← Older revision		Revision as of 22:52, 25 July 2026
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	The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF><REF>PMID:10089483</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB ~~has~~ three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka).		The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF><REF>PMID:10089483</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB had three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka). In 2022, Protein Data Bank China (PDBc) became an Associate Member.

	==New Releases Cycle==		==New Releases Cycle==

Eric Martz: /* See Also in Proteopedia */

2024-08-18T01:02:45Z

See Also in Proteopedia

← Older revision		Revision as of 01:02, 18 August 2024
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	===See Also in Proteopedia===		===See Also in Proteopedia===

	*[[AlphaFold#AlphaFold_Database_of_Predictions Database of structures predicted by AlphaFold2]].		*[[AlphaFold#AlphaFold_Database_of_Predictions\|Database of structures predicted by AlphaFold2]].
	*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.		*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.
	*[[About Macromolecular Structure]], a list of pages in Proteopedia		*[[About Macromolecular Structure]], a list of pages in Proteopedia

Eric Martz: /* See Also in Proteopedia */

2024-08-18T01:02:26Z

See Also in Proteopedia

← Older revision		Revision as of 01:02, 18 August 2024
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	===See Also in Proteopedia===		===See Also in Proteopedia===

	*[[~~https://proteopedia.org/wiki/index.php/~~AlphaFold#AlphaFold_Database_of_Predictions\|Database of structures predicted by AlphaFold2]].		*[[AlphaFold#AlphaFold_Database_of_Predictions Database of structures predicted by AlphaFold2]].
	*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.		*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.
	*[[About Macromolecular Structure]], a list of pages in Proteopedia		*[[About Macromolecular Structure]], a list of pages in Proteopedia

Eric Martz: /* See Also in Proteopedia */

2024-08-18T01:02:02Z

See Also in Proteopedia

← Older revision		Revision as of 01:02, 18 August 2024
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	===See Also in Proteopedia===		===See Also in Proteopedia===

			*[[https://proteopedia.org/wiki/index.php/AlphaFold#AlphaFold_Database_of_Predictions\|Database of structures predicted by AlphaFold2]].
	*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.		*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.
	*[[About Macromolecular Structure]], a list of pages in Proteopedia		*[[About Macromolecular Structure]], a list of pages in Proteopedia

Eric Martz: /* See Also in Proteopedia */

2024-08-18T00:58:32Z

See Also in Proteopedia

← Older revision		Revision as of 00:58, 18 August 2024
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	===See Also in Proteopedia===		===See Also in Proteopedia===

			*[[ModelArchive]] for [[Empirical models\|non-empirical]] models.
	*[[About Macromolecular Structure]], a list of pages in Proteopedia		*[[About Macromolecular Structure]], a list of pages in Proteopedia
	*[[Atomic coordinate file]]		*[[Atomic coordinate file]]

Wayne Decatur: /* External Sources */

2024-08-15T18:37:50Z

External Sources

← Older revision		Revision as of 18:37, 15 August 2024
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	*Sussman JL, Lin D, Jiang J, Manning NO, Prilusky J, Ritter O, Abola EE (1998). "Protein data bank (PDB): a database of 3D structural information of biological macromolecules". ''Acta Cryst'' '''D54''':1078-1084. PMID 10089483.		*Sussman JL, Lin D, Jiang J, Manning NO, Prilusky J, Ritter O, Abola EE (1998). "Protein data bank (PDB): a database of 3D structural information of biological macromolecules". ''Acta Cryst'' '''D54''':1078-1084. PMID 10089483.
	*[http://www.umass.edu/microbio/rasmol/1st_xtls.htm Earliest Solutions for Macromolecular Crystal Structures]		*[http://www.umass.edu/microbio/rasmol/1st_xtls.htm Earliest Solutions for Macromolecular Crystal Structures]
			*[https://www.rcsb.org/news/feature/66acd3c8eb1f4889a9e4432b 'PDB Archive Serves Structures Determined by Integrative and Hybrid Methods (IHM) (August 2024)']
	*See also [[Proteopedia:Policy#Theoretical_Models \| Theoretical Models]].		*See also [[Proteopedia:Policy#Theoretical_Models \| Theoretical Models]].

	==References and Notes==		==References and Notes==
	<references />		<references />

Joel L. Sussman at 07:15, 23 October 2021

2021-10-23T07:15:14Z

← Older revision		Revision as of 07:15, 23 October 2021
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	The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB has three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka).		The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF><REF>PMID:10089483</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB has three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka).

	==New Releases Cycle==		==New Releases Cycle==

Eric Martz: /* External Sources */

2021-07-31T13:44:33Z

External Sources

← Older revision		Revision as of 13:44, 31 July 2021
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	*[http://www.pdb.org RCSB PDB]		*[http://www.pdb.org RCSB PDB]
	*[http://en.wikipedia.org/wiki/Protein_data_bank Protein Data Bank in Wikipedia]		*[http://en.wikipedia.org/wiki/Protein_data_bank Protein Data Bank in Wikipedia]
			*"Synergies between the Protein Data Bank and the community", 2021<ref name="synergies">PMID: 33963295</ref>.
	*Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res.35:D301-3. (2007) PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17142228 17142228].		*Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res.35:D301-3. (2007) PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17142228 17142228].
	*Berman HM <i>et al.</i>, The Protein Data Bank, Acta Crystallogr D Biol Crystallogr.58:899-907 (2002). PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12037327 12037327]		*Berman HM <i>et al.</i>, The Protein Data Bank, Acta Crystallogr D Biol Crystallogr.58:899-907 (2002). PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12037327 12037327]
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	*[http://www.umass.edu/microbio/rasmol/1st_xtls.htm Earliest Solutions for Macromolecular Crystal Structures]		*[http://www.umass.edu/microbio/rasmol/1st_xtls.htm Earliest Solutions for Macromolecular Crystal Structures]
	*See also [[Proteopedia:Policy#Theoretical_Models \| Theoretical Models]].		*See also [[Proteopedia:Policy#Theoretical_Models \| Theoretical Models]].

	==References and Notes==		==References and Notes==
	<references />		<references />

Eric Martz at 00:23, 15 January 2020

2020-01-15T00:23:10Z

← Older revision		Revision as of 00:23, 15 January 2020
Line 1:		Line 1:
	The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB has three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka).		The [http://www.wwpdb.org World Wide Protein Data Bank] (wwPDB)<ref>PMID: 14634627</ref><ref>PMID: 17142228</ref> is the internationally recognized sole repository<ref>PMID: 30357364</ref> of all published, empirically-determined atomic resolution macromolecular three-dimensional (3D) structure data. Founded in 1971 by Drs. Edgar Meyer and Walter Hamilton at [http://www.bnl.gov Brookhaven National Laboratory]<REF>PMID:875032</REF>, management of the Protein Data Bank was headed by Tom Koestle until 1994 and then by [http://www.weizmann.ac.il/~joel Joel L. Sussman] till 1999, when it was transferred to members of the [http://home.rcsb.org/ Research Collaboratory for Structural Bioinformatics (RCSB)]. RCSB is managed at Rutgers University and the San Diego Supercomputer Center. It was directed by [http://en.wikipedia.org/wiki/Helen_M._Berman Helen M. Berman] until July 2014, when Stephen K. Burley took over the directorship<ref>[http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q4/home.html#one2 Leadership Transition], RCSB Newsletter, Fall 2014.</ref>. In 2008, the PDB has three official branches: the Research Collaboratory for Structural Bioinformatics (RCSB, USA), the European Bioinformatics Institute (PDBe, UK), and the Protein Data Bank Japan (PDBj, Osaka).

	==New Releases Cycle==		==New Releases Cycle==