Proteopedia:About - Revision history

Eric Martz: /* Proteopedia Mission Statement */

2024-03-11T19:34:05Z

Proteopedia Mission Statement

← Older revision		Revision as of 19:34, 11 March 2024
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	__TOC__		__TOC__
	</div>		</div>
			==[[Proteopedia:Overview\|Overview of Proteopedia]]==
			The [[Proteopedia:Overview\|Overview]] '''briefly''' introduces Purpose, History, Unique Capabilities, Types of Contents, and Usage Statistics. More details follow below.

	==Proteopedia Mission Statement==		==Proteopedia Mission Statement==
	To collect, organize and disseminate structural & functional knowledge about biomacromolecules, their assemblies and interactions with small molecules, in a user-friendly way to a broad scientific audience as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''		To collect, organize and disseminate structural & functional knowledge about biomacromolecules, their assemblies and interactions with small molecules, in a user-friendly way to a broad scientific audience as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''

Jaime Prilusky at 18:36, 20 January 2019

2019-01-20T18:36:10Z

← Older revision		Revision as of 18:36, 20 January 2019
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	==Most active contributors==		==Most active contributors==
	~~{\| style~~=~~"margin:1em auto; background:#F5F5FC;"~~		<table border='1'>
	~~\|- style="vertical-align:top;"~~		<tr><td style="margin:3px; background:#D7D7FE; font-size:1.25em; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#000; padding:0.2em 0.4em;">The Scoreboard</td></tr>
	~~! style="padding:2px;" \|~~ <~~p id="Scoreboard"~~ style="margin:3px; background:#D7D7FE; font-size:1.25em; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#000; padding:0.2em 0.4em;">The Scoreboard</p>		<tr><td><div id="Contribute">{{Special:ContributionScores}}Score based on pages-edited and number-of-edits.<br>List excludes members of the Proteopedia Team.<br>[[Special:ContributionScores\|All scores...]]</div></td></tr>
	~~\| style="background:#F5F5FC;padding:2px 5px 5px;" \|~~ <div id="Contribute"~~><center~~>{{Special:ContributionScores}}Score based on pages-edited and number-of-edits.<br>List excludes members of the Proteopedia Team.<br>[[Special:ContributionScores\|All scores...]]</~~center~~></~~div~~>		</table>
	\|}


	===Seeded pages===		===Seeded pages===
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	==Additional key references about Proteopedia==		==Additional key references about Proteopedia==
	<ref group='xtra'>Prilusky, J. & Sussman, J.L. BLOG in ''eLife'' [http://elifesciences.org/labs/a9c66d96/sharing-macromolecule-concepts-online-with-proteopedia ''Sharing macromolecule concepts online with Proteopedia'' (2016)].</ref>
	<ref group='xtra'>doi: 10.1002/ijch.201300024</ref>		<ref group='xtra'>Prilusky, J. & Sussman, J.L. BLOG in ''eLife'' [http://elifesciences.org/labs/a9c66d96/sharing-macromolecule-concepts-online-with-proteopedia ''Sharing macromolecule concepts online with Proteopedia'' (2016)].</ref><ref group='xtra'>doi: 10.1002/ijch.201300024</ref><ref group='xtra'>doi: 10.1007/978-94-007-2530-0_14</ref><ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref><ref group='xtra'>doi: 10.1002/bmb.20431</ref><ref group='xtra'>PMID 21567857 </ref><ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref><ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>
	<ref group='xtra'>doi: 10.1007/978-94-007-2530-0_14</ref>
	<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>
	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
	<ref group='xtra'>PMID 21567857 </ref>
	<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>
	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>

	==Contact==		==Contact==
	If you have any questions, please contact {{Template:Contact}}.		If you have any questions, please contact {{Template:Contact}}.
	You are also welcome to contact any of the people listed on this page. Go to their personal page, and click "E-mail this user" in the "toolbox" at the left side of the page.		You are also welcome to contact any of the people listed on this page. Go to their personal page, and click "E-mail this user" in the "toolbox" at the left side of the page.

Joel L. Sussman at 14:13, 20 January 2019

2019-01-20T14:13:00Z

← Older revision		Revision as of 14:13, 20 January 2019
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	<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>		<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>
	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
			<ref group='xtra'>PMID 21567857 </ref>
	<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>		<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>
	~~<ref group='xtra'>PMID 21567857 </ref>~~
	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>


	==Contact==		==Contact==
	If you have any questions, please contact {{Template:Contact}}.		If you have any questions, please contact {{Template:Contact}}.
	You are also welcome to contact any of the people listed on this page. Go to their personal page, and click "E-mail this user" in the "toolbox" at the left side of the page.		You are also welcome to contact any of the people listed on this page. Go to their personal page, and click "E-mail this user" in the "toolbox" at the left side of the page.

Joel L. Sussman at 13:47, 20 January 2019

2019-01-20T13:47:55Z

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 |}
 ===Seeded pages===
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 * [http://www.weizmann.ac.il Weizmann Institute of Science]
 * [http://www.elixir-europe.org ELIXIR]
 ==Contact==
 If you have any questions, please contact {{Template:Contact}}.
 You are also welcome to contact any of the people listed on this page. Go to their personal page, and click  "E-mail this user" in the "toolbox" at the left side of the page.

Joel L. Sussman at 13:45, 20 January 2019

2019-01-20T13:45:23Z

← Older revision		Revision as of 13:45, 20 January 2019
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	===Seeded pages===		===Seeded pages===
	Proteopedia contains one page for every entry in the [http://www.wwpdb.org World Wide Protein Data Bank], which contained >~~139~~,000 entries in ~~April~~, ~~2018~~. Proteopedia is updated weekly with new entries shortly after they are released by the Protein Data Bank. Most of these pages, which are titled with a four-character [[PDB code\|PDB identification code]], are "seeded" automatically to include a default view of the [[Biological Unit\|quaternary assembly]] ("biological unit", or if not provided by [[PDBe]], the [[asymmetric unit]]), the abstract of the publication, green links to highlight sites and ligands, and molecule-specific links to other viewers and databases. If you click "Random" in the "navigation" box at the upper left, usually you will get an article titled with a PDB code, since they outnumber human-authored articles.		Proteopedia contains one page for every entry in the [http://www.wwpdb.org World Wide Protein Data Bank], which contained >148,000 entries in January, 2019. Proteopedia is updated weekly with new entries shortly after they are released by the Protein Data Bank. Most of these pages, which are titled with a four-character [[PDB code\|PDB identification code]], are "seeded" automatically to include a default view of the [[Biological Unit\|quaternary assembly]] ("biological unit", or if not provided by [[PDBe]], the [[asymmetric unit]]), the abstract of the publication, green links to highlight sites and ligands, and molecule-specific links to other viewers and databases. If you click "Random" in the "navigation" box at the upper left, usually you will get an article titled with a PDB code, since they outnumber human-authored articles.

	===Authored pages===		===Authored pages===

Joel L. Sussman at 13:44, 20 January 2019

2019-01-20T13:44:09Z

← Older revision		Revision as of 13:44, 20 January 2019
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	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
	<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>		<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>

	<ref group='xtra'>PMID 21567857 </ref>		<ref group='xtra'>PMID 21567857 </ref>

	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>

Joel L. Sussman at 13:43, 20 January 2019

2019-01-20T13:43:25Z

← Older revision		Revision as of 13:43, 20 January 2019
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	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
	<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>		<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>

			<ref group='xtra'>PMID 21567857 </ref>

	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>

Joel L. Sussman at 13:40, 20 January 2019

2019-01-20T13:40:05Z

← Older revision		Revision as of 13:40, 20 January 2019
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	<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>		<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>
	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
	<ref group='xtra'>~~DOI~~: 10.1007/978-90-481-2339-1_11</ref>		<ref group='xtra'> Hodis, E., Prilusky, J., & Sussman, J.L. in From Molecules to Medicines (2009). [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 Tools to Make 3D Structural Data More Comprehensible: Emovie & Proteopedia] pg. 169-182.</ref>
	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>

Joel L. Sussman: /* Additional key references about Proteopedia */

2019-01-20T13:31:08Z

Additional key references about Proteopedia

← Older revision		Revision as of 13:31, 20 January 2019
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	<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>		<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>
	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>
	<ref group='xtra'>~~doi~~: 10.1007/978-90-481-2339-1_11</ref>		<ref group='xtra'>DOI: 10.1007/978-90-481-2339-1_11</ref>
	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>

Joel L. Sussman at 13:27, 20 January 2019

2019-01-20T13:27:14Z

← Older revision		Revision as of 13:27, 20 January 2019
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	<ref group='xtra'>doi: 10.1007/978-94-007-2530-0_14</ref>		<ref group='xtra'>doi: 10.1007/978-94-007-2530-0_14</ref>
	<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>		<ref group='xtra'>doi: 10.1016/j.jsb.2011.04.011</ref>


	<ref group='xtra'>doi: 10.1002/bmb.20431</ref>		<ref group='xtra'>doi: 10.1002/bmb.20431</ref>

	<ref group='xtra'>doi: 10.1007/978-90-481-2339-1_11</ref>		<ref group='xtra'>doi: 10.1007/978-90-481-2339-1_11</ref>


	<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>		<ref group='xtra'>PMID 18673581 </ref><references group='xtra'/>