Proteopedia:Cookbook - Revision history

Jaime Prilusky at 03:28, 27 June 2026

2026-06-27T03:28:00Z

← Older revision		Revision as of 03:28, 27 June 2026
Line 75:		Line 75:
	==Movies mp4==		==Movies mp4==
	Click the ''Play'' icon below to start the sample movie.<br>		Click the ''Play'' icon below to start the sample movie.<br>
	<html5media height="300" width="300" loop>~~/mp4/Resolution_holton~~.mp4</html5media>		<html5media height="300" width="300" loop>File:CrestUWMilwaukee2011-Video1.mp4</html5media>
	{{Clear}}		{{Clear}}
	<pre><html5media height="300" width="300" loop>~~/mp4/file~~.mp4</html5media></pre>		<pre><html5media height="300" width="300" loop>File:CrestUWMilwaukee2011-Video1.mp4</html5media></pre>
	Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing.		Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing.

Karsten Theis at 19:58, 2 June 2025

2025-06-02T19:58:30Z

← Older revision		Revision as of 19:58, 2 June 2025
Line 89:		Line 89:

	== Embedded Youtube Shorts ==		== Embedded Youtube Shorts ==
	<html5media height="300" width="~~300~~">https://www.youtube.com/shorts/9hLJao96r0k</html5media>		<html5media height="300" width="180">https://www.youtube.com/shorts/9hLJao96r0k</html5media>

	The text that is visible upon starting the video goes away as you move your mouse out of the video window. It might be appropriate to mention that to the reader/viewer for better visibility.		The text that is visible upon starting the video goes away as you move your mouse out of the video window. It might be appropriate to mention that to the reader/viewer for better visibility.

Karsten Theis at 18:17, 2 June 2025

2025-06-02T18:17:20Z

← Older revision		Revision as of 18:17, 2 June 2025
Line 90:		Line 90:
	== Embedded Youtube Shorts ==		== Embedded Youtube Shorts ==
	<html5media height="300" width="300">https://www.youtube.com/shorts/9hLJao96r0k</html5media>		<html5media height="300" width="300">https://www.youtube.com/shorts/9hLJao96r0k</html5media>

			The text that is visible upon starting the video goes away as you move your mouse out of the video window. It might be appropriate to mention that to the reader/viewer for better visibility.

	==Embedded Vimeo ==		==Embedded Vimeo ==

Eric Martz: /* Movies mp4 */

2024-11-25T16:44:51Z

Movies mp4

← Older revision		Revision as of 16:44, 25 November 2024
Line 80:		Line 80:
	Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing.		Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing.

	A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and ~~double~~ clicking resumes playing in both Mac OS X and Windows. This is		A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and clicking again resumes playing in both Mac OS X and Windows. This is
	useful in case the controller is not displayed ("controller=false").		useful in case the controller is not displayed ("controller=false").

Eric Martz: /* Movies mp4 */

2024-11-25T16:38:36Z

Movies mp4

← Older revision		Revision as of 16:38, 25 November 2024
Line 75:		Line 75:
	==Movies mp4==		==Movies mp4==
	Click the ''Play'' icon below to start the sample movie.<br>		Click the ''Play'' icon below to start the sample movie.<br>
	<html5media height="300" width="300">/mp4/Resolution_holton.mp4</html5media>		<html5media height="300" width="300" loop>/mp4/Resolution_holton.mp4</html5media>
	{{Clear}}		{{Clear}}
	<pre><html5media height="300" width="300">/mp4/file.mp4</html5media></pre>		<pre><html5media height="300" width="300" loop>/mp4/file.mp4</html5media></pre>
	Shows the movie with the with a width of 300 and a height of 300 pixels.		Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing.

	A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and double clicking resumes playing in both Mac OS X and Windows. This is		A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and double clicking resumes playing in both Mac OS X and Windows. This is

Eric Martz: /* Capturing Movies */

2024-08-18T19:45:02Z

Capturing Movies

← Older revision		Revision as of 19:45, 18 August 2024
Line 71:		Line 71:
	[http://firstglance.jmol.org/slides.htm overview]).		[http://firstglance.jmol.org/slides.htm overview]).

	Complex operations and manual movements can be captured as movies by "screen recording". Here are [http://firstglance.jmol.org/videocapture.htm examples and instructions].		Complex operations and manual movements with the mouse can be captured as movies by "screen recording". Here are [http://firstglance.jmol.org/videocapture.htm examples and instructions].

	==Movies mp4==		==Movies mp4==

Eric Martz: /* Capturing Movies */

2024-08-18T19:44:42Z

Capturing Movies

← Older revision		Revision as of 19:44, 18 August 2024
Line 70:		Line 70:
	On pages titled with a [[PDB ID]], simple rocking or spinning movies can be captured using the ''Export Animated Image'' link under the molecule, or by clicking ''FirstGlance'' in the Resources block, and then clicking ''Save Image or Animation for Powerpoint'' under the molecule (see		On pages titled with a [[PDB ID]], simple rocking or spinning movies can be captured using the ''Export Animated Image'' link under the molecule, or by clicking ''FirstGlance'' in the Resources block, and then clicking ''Save Image or Animation for Powerpoint'' under the molecule (see
	[http://firstglance.jmol.org/slides.htm overview]).		[http://firstglance.jmol.org/slides.htm overview]).

			Complex operations and manual movements can be captured as movies by "screen recording". Here are [http://firstglance.jmol.org/videocapture.htm examples and instructions].

	==Movies mp4==		==Movies mp4==

Eric Martz: /* Synchronizing molecules */

2024-08-18T19:43:01Z

Synchronizing molecules

← Older revision		Revision as of 19:43, 18 August 2024
Line 66:		Line 66:
	==Synchronizing molecules==		==Synchronizing molecules==
	Please see [[Jmol/Synchronization]]		Please see [[Jmol/Synchronization]]

			==Capturing Movies==
			On pages titled with a [[PDB ID]], simple rocking or spinning movies can be captured using the ''Export Animated Image'' link under the molecule, or by clicking ''FirstGlance'' in the Resources block, and then clicking ''Save Image or Animation for Powerpoint'' under the molecule (see
			[http://firstglance.jmol.org/slides.htm overview]).

	==Movies mp4==		==Movies mp4==

Eric Martz at 17:34, 29 July 2024

2024-07-29T17:34:25Z

← Older revision		Revision as of 17:34, 29 July 2024
Line 1:		Line 1:
	~~{{}}~~This page contains some advanced editing information. Make sure you looked at [[Help:Getting Started in Proteopedia]] and [[Help:Editing]] before you delve into this page.		This page contains some advanced editing information. Make sure you looked at [[Help:Getting Started in Proteopedia]] and [[Help:Editing]] before you delve into this page.

	==Text color==		==Text color==

Eric Martz at 17:34, 29 July 2024

2024-07-29T17:34:01Z

← Older revision		Revision as of 17:34, 29 July 2024
Line 1:		Line 1:
	This page contains some advanced editing information. Make sure you looked at [[Help:Getting Started in Proteopedia]] and [[Help:Editing]] before you delve into this page.		{{}}This page contains some advanced editing information. Make sure you looked at [[Help:Getting Started in Proteopedia]] and [[Help:Editing]] before you delve into this page.

	==Text color==		==Text color==
Line 246:		Line 246:
	[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf].		[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf].
	<!-- end of content inserted by the ConSurf template -->		<!-- end of content inserted by the ConSurf template -->

			==ConSurf Documentation==
			[[ConSurf/Index]] has a list of many articles about ConSurf and evolutionary conservation.

	==Combine Proteopedia scenes with JSmol scripting==		==Combine Proteopedia scenes with JSmol scripting==