Rhodopsin 3D structures - Revision history

Jaime Prilusky at 09:57, 28 May 2025

2025-05-28T09:57:31Z

← Older revision		Revision as of 09:57, 28 May 2025
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	**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />		**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />
	**[[2ksy]] – NpSRII - NMR<br />		**[[2ksy]] – NpSRII - NMR<br />
	**[[~~7pnc~~]] - NpSRII + retinal<br />		**[[9h20]] - NpSRII + retinal<br />
	**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />		**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />
	**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />		**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />

Michal Harel at 08:09, 8 August 2024

2024-08-08T08:09:32Z

← Older revision		Revision as of 08:09, 8 August 2024
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	**[[2hpy]] - bLRn + retinal<br />		**[[2hpy]] - bLRn + retinal<br />

	*Halorhodopsin		*Halorhodopsin see [[Bacteriorhodopsin]]

	**[[~~1e12~~]]~~, [[2jaf]], [[5ahy]], [[5ahz]] - HRn + detergents + retinal – ''Halobacterium salinarium''<br />~~		*Archaerhodopsin see [[Bacteriorhodopsin]]
	**[[2jag]] - HRn (mutant) + detergents + retinal<br />
	**[[3a7k]], [[3abw]], [[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[3vvk]] – NpRn + detergents + retinal<br />

	*~~Archaerhodopsin~~		*Proteorhodopsin see [[Bacteriorhodopsin]]

	**[[1uaz]] – HRn-1 + retinal – ''Halobacterium'' <br />		*Xanthorhodopsin see [[Bacteriorhodopsin]]
	**[[1vgo]], [[2z55]], [[3wqj]] - HRn-2 + retinal<br />
	**[[2ei4]] - HRn-2 + retinal + bacterioruberin<br />

	*Proteorhodopsin

	**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
	**[[4kly]], [[4knf]] - GpPRn + retinal<br />
	**[[4jq6]] – PRn + retinal + lipid<br />

	*Xanthorhodopsin

	**[[~~3ddl~~]] ~~- XRn + salinixanthin + detergents + retinal – ''Salinibacter ruber''<br />~~

	*Bestrhodopsin (Rn-Rn-bestrophin)		*Bestrhodopsin (Rn-Rn-bestrophin)
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	**[[7pl9]] - Rn + retinal – ''Phaeocystis'' – Cryo EM<br />		**[[7pl9]] - Rn + retinal – ''Phaeocystis'' – Cryo EM<br />

	*Deltarhodopsin		*Deltarhodopsin see [[Bacteriorhodopsin]]

	**[[~~4fbz~~]] ~~- Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />~~

	*Cyanorhodopsin		*Cyanorhodopsin

Michal Harel at 07:36, 8 August 2024

2024-08-08T07:36:25Z

← Older revision		Revision as of 07:36, 8 August 2024
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	*Xanthorhodopsin		*Xanthorhodopsin

	**[[3ddl]] - XRn + detergents + retinal – ''Salinibacter ruber''<br />		**[[3ddl]] - XRn + salinixanthin + detergents + retinal – ''Salinibacter ruber''<br />

	*Bestrhodopsin (Rn-Rn-bestrophin)		*Bestrhodopsin (Rn-Rn-bestrophin)

Michal Harel at 07:57, 17 October 2023

2023-10-17T07:57:56Z

← Older revision		Revision as of 07:57, 17 October 2023
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	*Rhodopsin (Rn)		*Rhodopsin (Rn)

	**[[~~5te5~~]], [[5te3]] – bRn - bovine<br />		**[[3cap]], [[5te3]], [[5te5]] – bRn - bovine<br />
	**[[6ofj]] – bRn – Cryo EM<br />		**[[6ofj]] – bRn – Cryo EM<br />
			**[[2j4y]], [[4bez]] - bRn (mutant)<br />
	**[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR />		**[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR />
	**[[1edx]] - bRn N terminal – NMR<BR />		**[[1edx]] - bRn N terminal – NMR<BR />
Line 14:		Line 15:
	**[[1fdf]] – bRn helix 7 - NMR<BR />		**[[1fdf]] – bRn helix 7 - NMR<BR />
	**[[3qc9]] – bRn + Mg + ADP<br />		**[[3qc9]] – bRn + Mg + ADP<br />
	**[[~~3oax~~]], [[~~3c9l~~]], [[~~2ped~~]], [[~~2i35~~]], [[~~2i36]], [[2i37~~]], [[1u19]], [[~~1gzm~~]], [[~~1l9h~~]], [[~~1hzx]] - bRn + retinal<br />~~		**[[1f88]], [[1gzm]], [[1hzx]], [[1jfp]], [[1l9h]], [[1u19]], [[2i35]], [[2i36]], [[2i37]], [[2ped]], [[3c9l]], [[3oax]] - bRn + retinal<br />
	**[[6fk6]], [[~~6fk7~~]], [[~~6fk8~~]], [[~~6fk9]], [[6fka]], [[6fkb]], [[6fkc]], [[6fkd]], [[5dys~~]] - bRn ~~(mutant) + detergents~~ + retinal ~~derivative~~<br />
	**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />		**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />
	**[[3cap]], [[5te3]] - bRn <br />		**[[3cap]], [[5te3]] - bRn <br />

Michal Harel at 07:46, 17 October 2023

2023-10-17T07:46:13Z

@@ Line 13: / Line 13: @@
 **[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR<BR />
 **[[1fdf]] – bRn helix 7 - NMR<BR />
 **[[3qc9]] – bRn + Mg + ADP<br />
 **[[3oax]], [[3c9l]], [[2ped]], [[2i35]], [[2i36]], [[2i37]], [[1u19]], [[1gzm]], [[1l9h]], [[1hzx]] - bRn + retinal<br />
@@ Line 19: / Line 18: @@
 **[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />
 **[[3cap]], [[5te3]] - bRn <br />
 **[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br />
 **[[3c9m]], [[5dys]] - bRn (mutant) + retinal<br />
-**[[2j4y]], [[4bez]] - bRn (mutant)<br />
+**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br />
 **[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br />
 **[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br />
@@ Line 35: / Line 49: @@
 **[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br />
 **[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br />
 *Sensory rhodopsin II

Michal Harel at 07:37, 17 October 2023

2023-10-17T07:37:51Z

← Older revision		Revision as of 07:37, 17 October 2023
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	**[[3oax]], [[3c9l]], [[2ped]], [[2i35]], [[2i36]], [[2i37]], [[1u19]], [[1gzm]], [[1l9h]], [[1hzx]] - bRn + retinal<br />		**[[3oax]], [[3c9l]], [[2ped]], [[2i35]], [[2i36]], [[2i37]], [[1u19]], [[1gzm]], [[1l9h]], [[1hzx]] - bRn + retinal<br />
	**[[6fk6]], [[6fk7]], [[6fk8]], [[6fk9]], [[6fka]], [[6fkb]], [[6fkc]], [[6fkd]], [[5dys]] - bRn (mutant) + detergents + retinal derivative<br />		**[[6fk6]], [[6fk7]], [[6fk8]], [[6fk9]], [[6fka]], [[6fkb]], [[6fkc]], [[6fkd]], [[5dys]] - bRn (mutant) + detergents + retinal derivative<br />
			**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />
	**[[3cap]], [[5te3]] - bRn <br />		**[[3cap]], [[5te3]] - bRn <br />
	**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br />		**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br />
Line 31:		Line 32:
	**[[5wkt]] – bRn + transducin peptide<br />		**[[5wkt]] – bRn + transducin peptide<br />
	**[[6fuf]] – bRn + G0 + retinal <br />		**[[6fuf]] – bRn + G0 + retinal <br />
			**[[8fcz]], [[8fd1]] – bRn + nanobody<br />
	**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br />		**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br />
	**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br />		**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br />
	**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br />		**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br />
			**[[6i9k]] – Rn1 + retinal + lipid – spider<br />
	**[[1xio]] – AnRn - ''Anabaena''<br />		**[[1xio]] – AnRn - ''Anabaena''<br />
	**[[2m3g]] – AnRn – NMR<br />		**[[2m3g]] – AnRn – NMR<br />
Line 48:		Line 51:
	**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />		**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />
	**[[2ksy]] – NpSRII - NMR<br />		**[[2ksy]] – NpSRII - NMR<br />
			**[[7pnc]] - NpSRII + retinal<br />
	**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />		**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />
	**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />		**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />
Line 55:		Line 59:
	**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />		**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />
	**[[5jrf]] – DeRn + detergent + I<br />		**[[5jrf]] – DeRn + detergent + I<br />
	**[[6yc3]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]], [[6tk1]], [[6tk2]], [[6tk3]], [[6tk4]], [[6tk5]], [[6tk6]], [[6tk7]], [[6xyt]], [[6yby]], [[6ybz]], [[6yc0]], [[6yc1]], [[6yc2]], [[6yc4]] – DeRn + detergent + Na + retinal<br />		**[[6yc3]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]], [[6tk1]], [[6tk2]], [[6tk3]], [[6tk4]], [[6tk5]], [[6tk6]], [[6tk7]], [[6xyt]], [[6yby]], [[6ybz]], [[6yc0]], [[6yc1]], [[6yc2]], [[6yc4]], [[7q36]] – DeRn + detergent + Na + retinal<br />
	**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]], [[6yt4]] – DeRn (mutant) + detergent + Na + retinal<br />		**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]], [[6yt4]] – DeRn (mutant) + detergent + Na + retinal<br />

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	**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]], [[6jy6]], [[6jy7]], [[6jy8]], [[6jy9]], [[6jya]], [[6jyb]], [[6jyc]], [[6jyd]], [[6jye]], [[6jyf]], [[7cri]], [[7crj]], [[7crk]], [[7crl]], [[7crs]], [[7crt]], [[7crx]], [[7cry]], [[7vgt]], [[7vgu]], [[7vgv]] – NmRn + retinal – ''Nonlabens marinus''<br />		**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]], [[6jy6]], [[6jy7]], [[6jy8]], [[6jy9]], [[6jya]], [[6jyb]], [[6jyc]], [[6jyd]], [[6jye]], [[6jyf]], [[7cri]], [[7crj]], [[7crk]], [[7crl]], [[7crs]], [[7crt]], [[7crx]], [[7cry]], [[7vgt]], [[7vgu]], [[7vgv]] – NmRn + retinal – ''Nonlabens marinus''<br />
			**[[7o8f]], [[7o8g]], [[7o8h]], [[7o8i]], [[7o8j]], [[7o8k]], [[7o8l]], [[7o8m]], [[7o8n]], [[7o8o]], [[7o8p]], [[7o8r]], [[7o8q]], [[7o8s]], [[7o8t]], [[7o8u]], [[7o8v]], [[7o8y]], [[7o8z]] – NmRn + retinal – serial millisecond crystallography<br />
	**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />		**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />
	**[[6wp8]], [[6xl3]] – Rn (mutant) + detergent + retinal – ''Mastigocladopsis repens''<br />		**[[6wp8]], [[6xl3]] – Rn (mutant) + detergent + retinal – ''Mastigocladopsis repens''<br />
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	**[[3ddl]] - XRn + detergents + retinal – ''Salinibacter ruber''<br />		**[[3ddl]] - XRn + detergents + retinal – ''Salinibacter ruber''<br />

			*Bestrhodopsin (Rn-Rn-bestrophin)

			**[[7pl9]] - Rn + retinal – ''Phaeocystis'' – Cryo EM<br />

	*Deltarhodopsin		*Deltarhodopsin

Joel L. Sussman at 07:39, 16 February 2023

2023-02-16T07:39:09Z

← Older revision		Revision as of 07:39, 16 February 2023
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	**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />		**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />
	**[[5jrf]] – DeRn + detergent + I<br />		**[[5jrf]] – DeRn + detergent + I<br />
	**[[~~6rew~~]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]], [[6tk1]], [[6tk2]], [[6tk3]], [[6tk4]], [[6tk5]], [[6tk6]], [[6tk7]], [[6xyt]], [[6yby]], [[6ybz]], [[6yc0]], [[6yc1]], [[6yc2~~]], [[6yc3~~]], [[6yc4]] – DeRn + detergent + Na + retinal<br />		**[[6yc3]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]], [[6tk1]], [[6tk2]], [[6tk3]], [[6tk4]], [[6tk5]], [[6tk6]], [[6tk7]], [[6xyt]], [[6yby]], [[6ybz]], [[6yc0]], [[6yc1]], [[6yc2]], [[6yc4]] – DeRn + detergent + Na + retinal<br />
	**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]], [[6yt4]] – DeRn (mutant) + detergent + Na + retinal<br />		**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]], [[6yt4]] – DeRn (mutant) + detergent + Na + retinal<br />

Michal Harel at 11:19, 16 February 2022

2022-02-16T11:19:17Z

← Older revision		Revision as of 11:19, 16 February 2022
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	*Chloride pump rhodopsin		*Chloride pump rhodopsin

	**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]], [[6jy6]], [[6jy7]], [[6jy8]], [[6jy9]], [[6jya]], [[6jyb]], [[6jyc]], [[6jyd]], [[6jye]], [[6jyf]], [[7cri]], [[7crj]] – NmRn + retinal – ''Nonlabens marinus''<br />		**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]], [[6jy6]], [[6jy7]], [[6jy8]], [[6jy9]], [[6jya]], [[6jyb]], [[6jyc]], [[6jyd]], [[6jye]], [[6jyf]], [[7cri]], [[7crj]], [[7crk]], [[7crl]], [[7crs]], [[7crt]], [[7crx]], [[7cry]], [[7vgt]], [[7vgu]], [[7vgv]] – NmRn + retinal – ''Nonlabens marinus''<br />
	**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />		**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />
	**[[6wp8]], [[6xl3]] – Rn (mutant) + detergent + retinal – ''Mastigocladopsis repens''<br />		**[[6wp8]], [[6xl3]] – Rn (mutant) + detergent + retinal – ''Mastigocladopsis repens''<br />
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	**[[6lm0]] - CRn + detergents + retinal – ''Cyanobacteria calothrix''<br />		**[[6lm0]] - CRn + detergents + retinal – ''Cyanobacteria calothrix''<br />
	**[[6lm1]] - CRn + detergents + retinal – ''Cyanobacteria tolypothrix''<br />		**[[6lm1]] - CRn + detergents + retinal – ''Cyanobacteria tolypothrix''<br />

			*Viral rhodopsin

			**[[6sqg]], [[7akw]], [[7akx]], [[7aky]] - Rn + detergents – organic lake phycodnavirus<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 09:33, 22 October 2020

2020-10-22T09:33:49Z

← Older revision		Revision as of 09:33, 22 October 2020
Line 23:		Line 23:
	**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br />		**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br />
	**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br />		**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br />
			**[[6nwe]] - bRn + peptide + detergents<br />
			**[[6pel]] - bRn + peptide + detergents + citronellol<br />
			**[[6pgs]] - bRn + peptide + detergents + geraniol<br />
			**[[6ph7]] - bRn + peptide + detergents + nerol<br />
	**[[5en0]] - bRN (mutant) + guanine nucleotide-binding protein peptide + retinal<br />		**[[5en0]] - bRN (mutant) + guanine nucleotide-binding protein peptide + retinal<br />
	**[[4pxf]] – bRn + arrestin peptide<br />		**[[4pxf]] – bRn + arrestin peptide<br />
Line 38:		Line 42:
	**[[4tl3]] – AaRn-1 (mutant) <br />		**[[4tl3]] – AaRn-1 (mutant) <br />
	**[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br />		**[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br />
			**[[6kfq]] - Rn + retinal + lipid – ''Rubrobacter xylanophilus''<br />

	*Sensory rhodopsin II		*Sensory rhodopsin II
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	**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />		**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra''<br />
	**[[5jrf]] – DeRn + detergent + I<br />		**[[5jrf]] – DeRn + detergent + I<br />
	**[[6rew]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]] – DeRn + detergent + Na + retinal<br />		**[[6rew]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]], [[6tk1]], [[6tk2]], [[6tk3]], [[6tk4]], [[6tk5]], [[6tk6]], [[6tk7]], [[6xyt]], [[6yby]], [[6ybz]], [[6yc0]], [[6yc1]], [[6yc2]], [[6yc3]], [[6yc4]] – DeRn + detergent + Na + retinal<br />
	**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]] – DeRn (mutant) + detergent + Na + retinal<br />		**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]], [[6yt4]] – DeRn (mutant) + detergent + Na + retinal<br />

	*Chloride pump rhodopsin		*Chloride pump rhodopsin

	**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]] – NmRn + retinal – ''Nonlabens marinus''<br />		**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]], [[6jy6]], [[6jy7]], [[6jy8]], [[6jy9]], [[6jya]], [[6jyb]], [[6jyc]], [[6jyd]], [[6jye]], [[6jyf]], [[7cri]], [[7crj]] – NmRn + retinal – ''Nonlabens marinus''<br />
	**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />		**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal<br />
			**[[6wp8]], [[6xl3]] – Rn (mutant) + detergent + retinal – ''Mastigocladopsis repens''<br />

	*Metarhodopsin II		*Metarhodopsin II
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	**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />		**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />

			*Cyanorhodopsin

			**[[6lm0]] - CRn + detergents + retinal – ''Cyanobacteria calothrix''<br />
			**[[6lm1]] - CRn + detergents + retinal – ''Cyanobacteria tolypothrix''<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel: New page: ==3D structures of rhodopsin== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Rhodopsin (Rn) **5te5, [[5te3...

2019-12-16T08:13:24Z

New page: ==3D structures of rhodopsin== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Rhodopsin (Rn) **5te5, [[5te3...

New page

==3D structures of rhodopsin==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}

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*Rhodopsin (Rn)

**[[5te5]], [[5te3]] – bRn - bovine 
**[[6ofj]] – bRn – Cryo EM 
**[[1vqx]], [[1nzs]] – bRn C terminal – NMR 
**[[1edx]] - bRn N terminal – NMR 
**[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR 
**[[1fdf]] – bRn helix 7 - NMR 
**[[2x72]] – bRn + retinal + guanine nucleotide-binding protein peptide 
**[[3qc9]] – bRn + Mg + ADP 
**[[3oax]], [[3c9l]], [[2ped]], [[2i35]], [[2i36]], [[2i37]], [[1u19]], [[1gzm]], [[1l9h]], [[1hzx]] - bRn + retinal 
**[[6fk6]], [[6fk7]], [[6fk8]], [[6fk9]], [[6fka]], [[6fkb]], [[6fkc]], [[6fkd]], [[5dys]] - bRn (mutant) + detergents + retinal derivative 
**[[3cap]], [[5te3]] - bRn 
**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal 
**[[3c9m]], [[5dys]] - bRn (mutant) + retinal 
**[[2j4y]], [[4bez]] - bRn (mutant) 
**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide 
**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide 
**[[5en0]] - bRN (mutant) + guanine nucleotide-binding protein peptide + retinal 
**[[4pxf]] – bRn + arrestin peptide 
**[[5wkt]] – bRn + transducin peptide 
**[[6fuf]] – bRn + G0 + retinal 
**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM 
**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM 
**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid 
**[[1xio]] – AnRn - ''Anabaena'' 
**[[2m3g]] – AnRn – NMR 
**[[4tl3]] - AnRn (mutant) + retinal 
**[[4hyj]] - Rn + retinal + lipid – ''Exiguobacterium Sibiricum'' 
**[[3am6]] – AaRn-2 + cholesterol + retinal – ''Acetabularia acetabulum'' 
**[[5awz]], [[5ax0]], [[5ax1]] – AaRn-1 + retinal 
**[[4tl3]] – AaRn-1 (mutant) 
**[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus 

*Sensory rhodopsin II

**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis'' 
**[[2ksy]] – NpSRII - NMR 
**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer 
**[[4gyc]] - NpSRII (mutant) + Rn II transducer 

*Sodium pump rhodopsin

**[[4xtl]], [[4xtn]], [[4xto]], [[3x3b]], [[3x3c]], [[5jrf]] – DeRn – ''Dokdonia eikastra'' 
**[[5jrf]] – DeRn + detergent + I 
**[[6rew]], [[6rex]], [[6rez]], [[6rf0]], [[6rf1]], [[6rf4]], [[6rf5]], [[6rf6]], [[6rf7]] – DeRn + detergent + Na + retinal 
**[[6rf3]], [[6rf9]], [[6rfa]], [[6rfb]], [[6rfc]] – DeRn (mutant) + detergent + Na + retinal 

*Chloride pump rhodopsin

**[[5g28]], [[5g2a]], [[5b2n]], [[5fjg]], [[5g54]], [[5ztk]], [[5ztl]], [[6ab9]], [[6aba]] – NmRn + retinal – ''Nonlabens marinus'' 
**[[5g2c]], [[5g2d]] - NmRn (mutant) + retinal 

*Metarhodopsin II

**[[3pqr]] – bMRn + guanine nucleotide-binding protein peptide + retinal 
**[[3pxo]] - bMRn + retinal 
**[[1ln6]] - bMRn + retinal 

*Bathorhodopsin

**[[2g87]] - bBRn + retinal 

*Lumirhodopsin

**[[2hpy]] - bLRn + retinal 

*Halorhodopsin

**[[1e12]], [[2jaf]], [[5ahy]], [[5ahz]] - HRn + detergents + retinal – ''Halobacterium salinarium'' 
**[[2jag]] - HRn (mutant) + detergents + retinal 
**[[3a7k]], [[3abw]], [[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[3vvk]] – NpRn + detergents + retinal 

*Archaerhodopsin

**[[1uaz]] – HRn-1 + retinal – ''Halobacterium'' 
**[[1vgo]], [[2z55]], [[3wqj]] - HRn-2 + retinal 
**[[2ei4]] - HRn-2 + retinal + bacterioruberin 

*Proteorhodopsin

**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium'' 
**[[4kly]], [[4knf]] - GpPRn + retinal 
**[[4jq6]] – PRn + retinal + lipid 

*Xanthorhodopsin

**[[3ddl]] - XRn + detergents + retinal – ''Salinibacter ruber'' 

*Deltarhodopsin

**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans'' 
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