RuBisCO 3D structures - Revision history

Michal Harel at 11:15, 13 November 2023

2023-11-13T11:15:52Z

← Older revision		Revision as of 11:15, 13 November 2023
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	** [[6kyi]] – rRBCD – rice<br />		** [[6kyi]] – rRBCD – rice<br />
	** [[5wsk]] – RBCO - wheat<br />		** [[5wsk]] – RBCO - wheat<br />
			**[[8bdb]] – RBCD – red alga<br />
	** [[3rg6]], [[1rbl]] – SeRBCO – ''Synechococcus elongatus''<br />		** [[3rg6]], [[1rbl]] – SeRBCO – ''Synechococcus elongatus''<br />
			**[[8bcm]] – SeRBCD – Cryo EM<br />
			**[[8iol]] – SeRBCD large subunit – Cryo EM<br />
	** [[2ybv]] - RBCO – ''Thermosynechococcus elongatus''<br />		** [[2ybv]] - RBCO – ''Thermosynechococcus elongatus''<br />
	** [[4lf2]], [[3qfw]] – RpRBCO – ''Rhodopseudomonas palustris''<br />		** [[4lf2]], [[3qfw]] – RpRBCO – ''Rhodopseudomonas palustris''<br />
			**[[7t1j]] – RBCO – ''Rhodospirillaceae bacterium''<br />
	** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />		** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />
	** [[1uw9]], [[1uwa]], [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] – CrRBCO (mutant) <br />		** [[1uw9]], [[1uwa]], [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] – CrRBCO (mutant) <br />
	**[[7jn4]] – CrRBCD – Cryo EM<br />		**[[7jn4]] – CrRBCD – Cryo EM<br />
	** [[1uzd]] – CrRBCO/spRBCO <br />		** [[1uzd]] – CrRBCO/spRBCO <br />
	** [[1svd]], [[6uew]] – ~~RBCD~~ – ''Halothiobacillus neapolitanus''<br />		** [[1svd]], [[6uew]], [[7zbt]] – HnRBCD – ''Halothiobacillus neapolitanus''<br />
	** [[1bxn]] – RBCO – ''Cupriavidus necator''<br />		** [[1bxn]] – RBCO – ''Cupriavidus necator''<br />
	** [[5rub]] - RrRBCO – ''Rhododpirillum rubrum''<br />		** [[5rub]] - RrRBCO – ''Rhododpirillum rubrum''<br />
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	** [[5oya]] – RBCD – ''Chaetocerus socialis'' – Cryo EM<br />		** [[5oya]] – RBCD – ''Chaetocerus socialis'' – Cryo EM<br />
	** [[5mz2]] – RBCD – ''Thalassiosira antarctica''<br />		** [[5mz2]] – RBCD – ''Thalassiosira antarctica''<br />
			**[[7t1c]] – RBCD – ''Sulfurivirga caldicuralii''<br />
			**[[7qsv]], [[7qsw]], [[7qsx]], [[7qsy]], [[7qsz]], [[7qt1]], [[7qvi]] – RBCO – synthetic<br />
			**[[7yyo]], [[7zc1]], [[8cmy]] – RBCD – ''Cyanobium'' – Cryo EM<br />

	* RuBisCO complex with inhibitor 2-CABP		* RuBisCO complex with inhibitor 2-CABP
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	** [[1aa1]] – spRBCO + phosphoglycerate<br />		** [[1aa1]] – spRBCO + phosphoglycerate<br />
	** [[1rus]] - RrRBCO + phosphoglycerate<br />		** [[1rus]] - RrRBCO + phosphoglycerate<br />
			**[[8dht]] – RBCO III + phosphoglycerate – ''Archaeoglobus fulgidus''<br />

	* RuBisCO complex with substrate		* RuBisCO complex with substrate
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	** [[6hbc]] – SeRBCO + CCMM – Cryo EM<br />		** [[6hbc]] – SeRBCO + CCMM – Cryo EM<br />
	** [[6smh]] – SeRBCO large subunit + RAF1 peptide – Cryo EM<br />		** [[6smh]] – SeRBCO large subunit + RAF1 peptide – Cryo EM<br />
	** [[6kkm]] - AnRBCO large subunit + RAF1<br />		**[[8io2]], [[8ioj]] – SeRBCO large subunit + ATRAF1 – Cryo EM<br />
	** [[6lrr]] - NoRBCO + RAF1 – Nostoc - Cryo EM<br />		**[[8ilb]], [[8ilm]] – SeRBCO large subunit + ATRAF1 + ATBSD2 – Cryo EM<br />
			**[[6kkm]] - AnRBCO large subunit + RAF1<br />
			**[[6lrr]] - NoRBCO + RAF1 – Nostoc - Cryo EM<br />
			**[[7xsd]] - NoRBCO + RAF1 + RbcX – Nostoc - Cryo EM<br />
	**[[6z1f]], [[6z1g]] - NoRBCO + RBCO activase - Cryo EM<br />		**[[6z1f]], [[6z1g]] - NoRBCO + RBCO activase - Cryo EM<br />
	**[[7jfo]], [[7jsx]] - CrRBCO + EPYC1 peptide - Cryo EM<br />		**[[7jfo]], [[7jsx]] - CrRBCO + EPYC1 peptide - Cryo EM<br />
	**[[7vwx]] – RrRBCO + GroES + GroEL – Cryo EM<br />		**[[7vwx]] – RrRBCO + GroES + GroEL – Cryo EM<br />
			**[[8ba7]] – RBCO + GroEL – Escherichia coli - Cryo EM<br />
			**[[7snv]], [[7vwx]] – HnRBCO + Cso/CSA peptide – Cryo EM<br />
			**[[7yk5]] – RBCO large subunit + PYCO1 binding motif – Cryo EM<br />

	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:50, 9 March 2022

2022-03-09T08:50:11Z

← Older revision		Revision as of 08:50, 9 March 2022
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	** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />		** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />
	** [[1uw9]], [[1uwa]], [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] – CrRBCO (mutant) <br />		** [[1uw9]], [[1uwa]], [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] – CrRBCO (mutant) <br />
			**[[7jn4]] – CrRBCD – Cryo EM<br />
	** [[1uzd]] – CrRBCO/spRBCO <br />		** [[1uzd]] – CrRBCO/spRBCO <br />
	** [[1svd]], [[6uew]] – RBCD – ''Halothiobacillus neapolitanus''<br />		** [[1svd]], [[6uew]] – RBCD – ''Halothiobacillus neapolitanus''<br />
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	** [[5mac]] - RBCO + 2-CABP - ''Methanococcoides burtonii''<br />		** [[5mac]] - RBCO + 2-CABP - ''Methanococcoides burtonii''<br />
	** [[6ftl]] - RBCO + 2-CABP - ''Skeletonema marinoi''<br />		** [[6ftl]] - RBCO + 2-CABP - ''Skeletonema marinoi''<br />
			**[[6ura]] - RBCO large subunit + 2-CABP – ''Promineum filum''<br />

	* RuBisCO complex with product		* RuBisCO complex with product
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	** [[6smh]] – SeRBCO large subunit + RAF1 peptide – Cryo EM<br />		** [[6smh]] – SeRBCO large subunit + RAF1 peptide – Cryo EM<br />
	** [[6kkm]] - AnRBCO large subunit + RAF1<br />		** [[6kkm]] - AnRBCO large subunit + RAF1<br />
	** [[6lrr]] - ~~RBCO~~ + RAF1 – Nostoc - Cryo EM<br />		** [[6lrr]] - NoRBCO + RAF1 – Nostoc - Cryo EM<br />
			**[[6z1f]], [[6z1g]] - NoRBCO + RBCO activase - Cryo EM<br />
			**[[7jfo]], [[7jsx]] - CrRBCO + EPYC1 peptide - Cryo EM<br />
			**[[7vwx]] – RrRBCO + GroES + GroEL – Cryo EM<br />

	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:21, 27 October 2020

2020-10-27T08:21:55Z

Michal Harel: New page: ==3D structures of RuBisCO== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * RuBisCO ** 1aus - spRBCO – spi...

2019-12-31T11:15:58Z

New page: ==3D structures of RuBisCO== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * RuBisCO ** 1aus - spRBCO – spi...

New page

==3D structures of RuBisCO==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

* RuBisCO

** [[1aus]] - spRBCO – spinach 
** [[4hhh]] – RBCO - pea 
** [[1mlv]] - pRBCO large subunit 
** [[1rld]], [[3rub]], [[3t15]], [[3zw6]], [[4rub]] – tRBCO – tobacco 
** [[3thg]] – RBCO – creosote bush 
** [[5wsk]] – RBCO - wheat 
** [[3rg6]], [[1rbl]] – SeRBCO – ''Synechococcus elongatus'' 
** [[2ybv]] - RBCO – ''Thermosynechococcus elongatus'' 
**[[4lf2]], [[3qfw]] – RpRBCO – ''Rhodopseudomonas palustris'' 
** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii'' 
** [[1uw9]], [[1uwa]] – CrRBCO (mutant) 
** [[1uzd]] – CrRBCO/spRBCO 
** [[1svd]], [[6uew]] – RBCD – ''Halothiobacillus neapolitanus'' 
** [[1bxn]] – RBCO – ''Cupriavidus necator'' 
** [[5rub]] - RrRBCO – ''Rhododpirillum rubrum'' 
** [[1rba]] - RrRBCO (mutant) 
** [[2wvw]] – RBCO – ''Anabena'' – Cryo EM 
** [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] - CrRBCO (mutant) 
** [[2cxe]], [[2cwx]] – PhRBCO - ''Pyrococcus horikoshii'' 
** [[1geh]] – TkRBCO – ''Thermococcus kodakaraensis'' 
**[[3wqp]] – TkRBCD (mutant) 
** [[1iwa]] - GpRBCO – ''Galdieria partita'' 
** [[1tel]] – RBCO large subunit – ''Chlorobium tepidum'' 
** [[5c2c]] - GaRBCO – ''Gallionella'' 
**[[6hun]] – RBCD – ''Hyperthermus butylicus'' 
**[[5oya]] – RBCD – ''Chaetocerus socialis'' – Cryo EM 
**[[5mz2]] – RBCD – ''Thalassiosira antarctica'' 

* RuBisCO complex with inhibitor 2-CABP

** [[1upm]], [[1upp]], [[1rbo]], [[3ruc]], [[8ruc]] - spRBCO + 2-CABP + cation 
** [[1ir1]] - spRBCO + 2-CABP + CO2 + Mg 
** [[8ruc]] - spRBCO + 2-CABP 
** [[1wdd]] – rRBCO + 2-CABP – rice 
** [[1rlc]] - tRBCO + 2-CABP 
** [[3kdn]], [[3a12]] – TkRBCO III + 2-CABP 
** [[3kdo]], [[3a13]] - TkRBCO III (mutant) + 2-CABP 
** [[1ir2]] - CrRBCO + 2-CABP 
** [[1bwv]] - GpRBCO + 2-CABP 
**[[4lf1]] - RpRBCO + 2-CABP 
**[[5han]], [[5hao]], [[5hjx]], [[5hjy]], [[5hk4]], [[5koz]], [[5hat]], [[5hql]], [[5hqm]] - RpRBCO (mutant) + 2-CABP 
**[[5c2g]] - GaRBCO + 2-CABP 
**[[5nv3]] - RBCO + 2-CABP - ''Rhodobacter sphaeroides'' 
** [[3zxw]] - SeRBCO + 2-CABP 
** [[5iu0]] - RBCO + 2-CABP - ''Arabidopsis thaliana'' 
** [[5mac]] - RBCO + 2-CABP - ''Methanococcoides burtonii'' 
** [[6ftl]] - RBCO + 2-CABP - ''Skeletonema marinoi'' 

* RuBisCO complex with product

** [[1aa1]] – spRBCO + phosphoglycerate 
** [[1rus]] - RrRBCO + phosphoglycerate 

* RuBisCO complex with substrate

** [[1rcx]], [[1rxo]] – spRBCO + ribulose-1,5-bisphosphate 
** [[9rub]] - RrRBCO + ribulose-1,5-bisphosphate 
** [[4mkv]] - pRBCO + ribulose-1,5-bisphosphate 
** [[1rsc]] - SeRBCO + xylulose-1,5-bisphosphate 
** [[1rco]] - spRBCO + xylulose-diol-1,5-bisphosphate 

* RuBisCO other complexes

** [[2h21]] – pRBCO large subunit + AdoMet 
** [[2h23]] - pRBCO large subunit + AdoHcy 
** [[2h2e]], [[1ozv]], [[1p0y]] - pRBCO large subunit + AdoMet + lysine 
** [[2h2j]] - pRBCO large subunit + sinefungin 
** [[1ej7]] – tRBCO + phosphate 
** [[3axk]] – rRBCO + NADP 
** [[3axm]] – rRBCO + 6-phosphogluconic acid 
** [[2d69]] – PhRBCO + sulfate 
** [[2rus]] - RrRBCO + CO2 + Mg 
** [[4f0h]] – GsRBCO + O2 – ''Galdieria sulphuraria'' 
** [[4f0k]] - GsRBCO + CO2 + Mg 
** [[4f0m]] - GsRBCO + Mg 
**[[6hbc]] – SeRBCO + CCMM – Cryo EM 

}}

[[Category:Topic Page]]

← Older revision		Revision as of 08:21, 27 October 2020
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	** [[1rld]], [[3rub]], [[3t15]], [[3zw6]], [[4rub]] – tRBCO – tobacco<br />		** [[1rld]], [[3rub]], [[3t15]], [[3zw6]], [[4rub]] – tRBCO – tobacco<br />
	** [[3thg]] – RBCO – creosote bush<br />		** [[3thg]] – RBCO – creosote bush<br />
			** [[6kyi]] – rRBCD – rice<br />
	** [[5wsk]] – RBCO - wheat<br />		** [[5wsk]] – RBCO - wheat<br />
	** [[3rg6]], [[1rbl]] – SeRBCO – ''Synechococcus elongatus''<br />		** [[3rg6]], [[1rbl]] – SeRBCO – ''Synechococcus elongatus''<br />
	** [[2ybv]] - RBCO – ''Thermosynechococcus elongatus''<br />		** [[2ybv]] - RBCO – ''Thermosynechococcus elongatus''<br />
	**[[4lf2]], [[3qfw]] – RpRBCO – ''Rhodopseudomonas palustris''<br />		** [[4lf2]], [[3qfw]] – RpRBCO – ''Rhodopseudomonas palustris''<br />
	** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />		** [[1uzh]], [[1gk8]] – CrRBCO – ''Chlamydomonas reinhardtii''<br />
	** [[1uw9]], [[1uwa]] – CrRBCO (mutant) <br />		** [[1uw9]], [[1uwa]], [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] – CrRBCO (mutant) <br />
	** [[1uzd]] – CrRBCO/spRBCO <br />		** [[1uzd]] – CrRBCO/spRBCO <br />
	** [[1svd]], [[6uew]] – RBCD – ''Halothiobacillus neapolitanus''<br />		** [[1svd]], [[6uew]] – RBCD – ''Halothiobacillus neapolitanus''<br />
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	** [[5rub]] - RrRBCO – ''Rhododpirillum rubrum''<br />		** [[5rub]] - RrRBCO – ''Rhododpirillum rubrum''<br />
	** [[1rba]] - RrRBCO (mutant)<br />		** [[1rba]] - RrRBCO (mutant)<br />
	** [[2wvw]] – ~~RBCO~~ – ''Anabena'' – Cryo EM~~<br />~~		** [[2wvw]], [[6lrs]] – AnRBCO – ''Anabena'' – Cryo EM<br />
	** [[2vdh]], [[2vdi]], [[2v67]], [[2v68]], [[2v63]], [[2v69]], [[2v6a]] - CrRBCO (mutant) <br />
	** [[2cxe]], [[2cwx]] – PhRBCO - ''Pyrococcus horikoshii''<br />		** [[2cxe]], [[2cwx]] – PhRBCO - ''Pyrococcus horikoshii''<br />
	** [[1geh]] – TkRBCO – ''Thermococcus kodakaraensis''<br />		** [[1geh]] – TkRBCO – ''Thermococcus kodakaraensis''<br />
	**[[3wqp]] – TkRBCD (mutant)<br />		** [[3wqp]] – TkRBCD (mutant)<br />
	** [[1iwa]] - GpRBCO – ''Galdieria partita''<br />		** [[1iwa]] - GpRBCO – ''Galdieria partita''<br />
	** [[1tel]] – RBCO large subunit – ''Chlorobium tepidum''<br />		** [[1tel]] – RBCO large subunit – ''Chlorobium tepidum''<br />
	** [[5c2c]] - GaRBCO – ''Gallionella''<br />		** [[5c2c]] - GaRBCO – ''Gallionella''<br />
	**[[6hun]] – RBCD – ''Hyperthermus butylicus''<br />		** [[6hun]] – RBCD – ''Hyperthermus butylicus''<br />
	**[[5oya]] – RBCD – ''Chaetocerus socialis'' – Cryo EM<br />		** [[5oya]] – RBCD – ''Chaetocerus socialis'' – Cryo EM<br />
	**[[5mz2]] – RBCD – ''Thalassiosira antarctica''<br />		** [[5mz2]] – RBCD – ''Thalassiosira antarctica''<br />

	* RuBisCO complex with inhibitor 2-CABP		* RuBisCO complex with inhibitor 2-CABP
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	** [[4f0k]] - GsRBCO + CO2 + Mg<br />		** [[4f0k]] - GsRBCO + CO2 + Mg<br />
	** [[4f0m]] - GsRBCO + Mg<br />		** [[4f0m]] - GsRBCO + Mg<br />
	**[[6hbc]] – SeRBCO + CCMM – Cryo EM<br />		** [[6hbc]] – SeRBCO + CCMM – Cryo EM<br />
			** [[6smh]] – SeRBCO large subunit + RAF1 peptide – Cryo EM<br />
			** [[6kkm]] - AnRBCO large subunit + RAF1<br />
			** [[6lrr]] - RBCO + RAF1 – Nostoc - Cryo EM<br />

	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]