Sigma factor 3D structures - Revision history

Openfox: Normalize
usage in #tree blocks

2026-03-29T15:43:14Z

Normalize <br/> usage in #tree blocks

Openfox: Fix TreeAndMenu broken list structure

2026-03-29T10:38:44Z

Fix TreeAndMenu broken list structure

← Older revision		Revision as of 10:38, 29 March 2026
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	**[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br />		**[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br />
	**[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br />		**[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br />
	**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial		**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial<br>transcription complex <br />
	transcription complex <br />
	**[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br />		**[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br />
	**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />		**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
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	**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />		**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />
	**[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM<br />		**[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM<br />

	*Sigma factor complex with protein and DNA and antibiotics		*Sigma factor complex with protein and DNA and antibiotics
	**[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br />		**[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br />

Openfox: Fix TreeAndMenu broken list structure

2026-03-29T09:41:18Z

Fix TreeAndMenu broken list structure

Joel L. Sussman at 15:39, 16 December 2023

2023-12-16T15:39:34Z

← Older revision		Revision as of 15:39, 16 December 2023
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	**[[6psq]], [[6psr]], [[6pss]], [[6pst]], [[6psu]], [[6psv]], [[6psw]] – EcSF-70 in transcription initiation complex + Trar – Cryo EM<br />		**[[6psq]], [[6psr]], [[6pss]], [[6pst]], [[6psu]], [[6psv]], [[6psw]] – EcSF-70 in transcription initiation complex + Trar – Cryo EM<br />
	**[[6n4c]], [[6oul]] – EcSF-70 in transcription initiation complex – Cryo EM<br />		**[[6n4c]], [[6oul]] – EcSF-70 in transcription initiation complex – Cryo EM<br />
	**[[~~6wrg~~]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br />		**[[7khe]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br />
	**[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br />		**[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br />
	**[[6wmu]], [[7c97]], [[7dy6]] – EcSF-70 in transcription open promoter complex + SspA – Cryo EM<br />		**[[6wmu]], [[7c97]], [[7dy6]] – EcSF-70 in transcription open promoter complex + SspA – Cryo EM<br />

Joel L. Sussman at 15:38, 16 December 2023

2023-12-16T15:38:10Z

← Older revision		Revision as of 15:38, 16 December 2023
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	**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />		**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
	**[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br />		**[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br />
	**[[5byh]] – EcSF-45 + RNAP subunits α,β,β’,ω <br />
	**[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br />		**[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br />
	**[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br />		**[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br />

Michal Harel at 09:58, 20 November 2023

2023-11-20T09:58:32Z

← Older revision		Revision as of 09:58, 20 November 2023
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	**[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />		**[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />
	**[[7p5x]] – MsSF-A in transcription initiation complex + PafBC – Cryo EM<br />		**[[7p5x]] – MsSF-A in transcription initiation complex + PafBC – Cryo EM<br />
	**[[8i24]] – AtSF-I6 + RNAP subunits α,β,β’,ω + DNA – Acetivibrio thermocellum - Cryo EM<br />		**[[8i24]] – AtSF-I6 + RNAP subunits α,β,β’,ω + DNA – ''Acetivibrio thermocellum'' - Cryo EM<br />
	**[[8i23]] – AtSF-I1 + RNAP subunits α,β,β’,ω + DNA - Cryo EM<br />		**[[8i23]] – AtSF-I1 + RNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
	**[[7ye1]] , [[7ye2]] – CcSF-70 + RNAP subunits α,β,β’,ω + DNA + GcrA – Cryo EM<br />		**[[7ye1]] , [[7ye2]] – CcSF-70 + RNAP subunits α,β,β’,ω + DNA + GcrA – Cryo EM<br />
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	**[[7xl3]], [[7xl4]] – PaSF-S in transcription activation complex + SutA – Cryo EM<br />		**[[7xl3]], [[7xl4]] – PaSF-S in transcription activation complex + SutA – Cryo EM<br />
	**[[7xya]] – PaSF-70 in transcription antitermination complex + ALPA – Cryo EM<br />		**[[7xya]] – PaSF-70 in transcription antitermination complex + ALPA – Cryo EM<br />
	**[[8gzg]], [[8gzh]] – SF-A + RNAP subunits α,β,β’,ω + DNA + RNA – Synechocystis - Cryo EM<br />		**[[8gzg]], [[8gzh]] – SF-A + RNAP subunits α,β,β’,ω + DNA + RNA – ''Synechocystis'' - Cryo EM<br />
	**[[8h40]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA – Anabaena - Cryo EM<br />		**[[8h40]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA – ''Anabaena'' - Cryo EM<br />
	**[[8h3v]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA + NtcB - Cryo EM<br />		**[[8h3v]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA + NtcB - Cryo EM<br />
	**[[7vpd]], [[7vpz]], [[7x74]], [[7x75]], [[7x76]] – ScSF-A + RNAP subunits α,β,β’,ω + metal uptake regulation protein + DNA + RNA - Cryo EM<br />		**[[7vpd]], [[7vpz]], [[7x74]], [[7x75]], [[7x76]] – ScSF-A + RNAP subunits α,β,β’,ω + metal uptake regulation protein + DNA + RNA - Cryo EM<br />

Michal Harel at 09:55, 20 November 2023

2023-11-20T09:55:01Z

← Older revision		Revision as of 09:55, 20 November 2023
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	**[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br />		**[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br />
	**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />		**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />
	**[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]], {{7u22]] – MtSF-A in transcription initiation complex<br />		**[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]], [[7u22]] – MtSF-A in transcription initiation complex<br />
	**[[6dcf]] – MtSF-A in transcription initiation complex + RbpA<br />		**[[6dcf]] – MtSF-A in transcription initiation complex + RbpA<br />
	**{{8hih]] – MtSF-A in transcription initiation complex + transctriptional regulatory protein – Cryo EM<br />		**[[8hih]] – MtSF-A in transcription initiation complex + transctriptional regulatory protein – Cryo EM<br />
	**[[6c04]], [[7kin]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />		**[[6c04]], [[7kin]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
	**[[7kif]], [[7kim]] – MtSF-A + RNAP subunits α,β,β’,ω + WhiB7 + DNA - Cryo EM<br />		**[[7kif]], [[7kim]] – MtSF-A + RNAP subunits α,β,β’,ω + WhiB7 + DNA - Cryo EM<br />
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	**[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[4xsx]], [[4xsy]], [[4xsz]] [[4zh3]], [[4zh4]], [[5uac]], [[5uah]], [[5ual]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />		**[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[4xsx]], [[4xsy]], [[4xsz]] [[4zh3]], [[4zh4]], [[5uac]], [[5uah]], [[5ual]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
	**[[7szj]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic – Cryo EM<br />		**[[7szj]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic – Cryo EM<br />


	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 09:52, 20 November 2023

2023-11-20T09:52:13Z

Show changes

Jaime Prilusky at 08:54, 29 March 2023

2023-03-29T08:54:15Z

← Older revision		Revision as of 08:54, 29 March 2023
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	**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />		**[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
	**[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br />		**[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br />
	**[[5byh]] – EcSF-45 + RNAP subunits α,β,β’,ω <br />
	**[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br />		**[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br />
	**[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br />		**[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br />

Michal Harel at 07:50, 6 April 2022

2022-04-06T07:50:11Z

← Older revision		Revision as of 09:41, 29 March 2026
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	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}		Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|

	*Sigma factor		*Sigma factor

	**[[1ku2]] – TaSF-A region 1.2-3.1 – ''Thermus aquaticus''<br />		**[[1ku2]] – TaSF-A region 1.2-3.1 – ''Thermus aquaticus''<br />
	**[[1ku3]] – TaSF-A region 4 (mutant)<br />		**[[1ku3]] – TaSF-A region 4 (mutant)<br />
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	**[[8b3z]] – BsSF-E N terminal <br />		**[[8b3z]] – BsSF-E N terminal <br />
	**[[5xe7]] – MtSF-J – ''Mycobacterium tuberculosis''<br />		**[[5xe7]] – MtSF-J – ''Mycobacterium tuberculosis''<br />

	*Sigma factor complex with DNA		*Sigma factor complex with DNA

	**[[3ugo]], [[3ugp]] - TaSF-A region 2 + DNA<br />		**[[3ugo]], [[3ugp]] - TaSF-A region 2 + DNA<br />
	**[[1ku7]] – TaSF-A region 4 (mutant) + DNA <br />		**[[1ku7]] – TaSF-A region 4 (mutant) + DNA <br />
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	**[[5ui5]] – AaSF-54 residues 61-398 + DNA <br />		**[[5ui5]] – AaSF-54 residues 61-398 + DNA <br />
	**[[6jhe]] – BsSF-W region 4 + DNA <br />		**[[6jhe]] – BsSF-W region 4 + DNA <br />

	*Sigma factor complex with anti-sigma factor		*Sigma factor complex with anti-sigma factor

	**[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />		**[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
	**[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />		**[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
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	**[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''<br />		**[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''<br />
	**[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />		**[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />

	*Sigma factor complex with protein		*Sigma factor complex with protein

	**[[3lev]] – TaSF-A residues 93-271 + antibody<br />		**[[3lev]] – TaSF-A residues 93-271 + antibody<br />
	**[[1l9u]] – TaSF-A region 1.1-4 + RNAP subunits α,β,β’,ω<br />		**[[1l9u]] – TaSF-A region 1.1-4 + RNAP subunits α,β,β’,ω<br />
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	**[[6dxo]] – SvSF-A + BLDN – ''Streptomyces venezuelae''<br />		**[[6dxo]] – SvSF-A + BLDN – ''Streptomyces venezuelae''<br />
	**[[7vf9]] – PaSF-38 + RNAP subunits α,β,β’,ω - Cryo EM<br />		**[[7vf9]] – PaSF-38 + RNAP subunits α,β,β’,ω - Cryo EM<br />

	*E. coli sigma factor-70 complex with protein, DNA and RNA		*E. coli sigma factor-70 complex with protein, DNA and RNA

	**[[6p1k]], [[7khb]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />		**[[6p1k]], [[7khb]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />
	**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />		**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />
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	**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />		**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />
	**[[6xlm]], [[7n4e]], [[7xui]] – EcSF-70 in elongation complex – Cryo EM<br />		**[[6xlm]], [[7n4e]], [[7xui]] – EcSF-70 in elongation complex – Cryo EM<br />

	*Other sigma factor complex with protein, DNA and RNA		*Other sigma factor complex with protein, DNA and RNA

	**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[7mli]], [[7mlj]] – TtSF-A in reiterative transcription complex <br />		**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[7mli]], [[7mlj]] – TtSF-A in reiterative transcription complex <br />
	**[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br />		**[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br />
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	**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />		**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />
	**[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM<br />		**[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM<br />


	*Sigma factor complex with protein and DNA and antibiotics		*Sigma factor complex with protein and DNA and antibiotics

	**[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br />		**[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br />
	**[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />		**[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />

← Older revision		Revision as of 07:50, 6 April 2022
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	*E. coli sigma factor complex with protein, DNA and RNA		*E. coli sigma factor complex with protein, DNA and RNA

	**[[6p1k]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />		**[[6p1k]], [[7khb]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />
	**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />		**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />
	**[[3iyd]] – EcSF-70 in transcription initiation complex + catabolite gene activator<br />		**[[3iyd]] – EcSF-70 in transcription initiation complex + catabolite gene activator<br />
	**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br />		**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br />
	**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]] – EcSF-70 in transcription initiation complex<br />		**[[7khe]], [[7khi]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P – Cryo EM<br />
	**[[6b6h]] – EcSF-70 in transcription activation complex - Cryo EM<br />		**[[7khc]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + POP – Cryo EM<br />
			**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]], [[6utv]], [[6utw]], [[6utx]] [[6uty]], [[6utz]], [[6uu0]], [[6uu1]], [[6uuc]] [[6uu3]], [[6uu4]], [[6uu5]], [[6uu6]], [[6uu7]], [[6uu8]], [[6uu2]], [[6uua]], [[6uuc]] – EcSF-70 in transcription initiation complex<br />
			**[[6b6h]], [[6xl5]], [[6xl9]], [[6xlj]], [[6xll]] – EcSF-70 in transcription activation complex - Cryo EM<br />
	**[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />		**[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />
	**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />		**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
			**[[7bef]], [[7beg]], [[7chw]], [[7mkd]], [[7mke]], [[7mki]], [[7mkj]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
	**[[6n61]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA<br />		**[[6n61]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA<br />
	**[[6n60]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + microcin + DNA<br />		**[[6n60]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + microcin + DNA<br />
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	**[[5vt0]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM<br />		**[[5vt0]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM<br />
	**[[6k4y]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM<br />		**[[6k4y]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM<br />
	**[[6ldi]], [[7c17]] – EcSF-70 in transcription activation complex + Cuer – Cryo EM<br />		**[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcSF-70 in transcription activation complex + Cuer – Cryo EM<br />
	**[[6pb4]], [[6pb5]], [[6pb6]] – EcSF-70 in transcription activation complex + Crp – Cryo EM<br />		**[[6pb4]], [[6pb5]], [[6pb6]] – EcSF-70 in transcription activation complex + Crp – Cryo EM<br />
	**[[6n57]], [[6n58]] – EcSF-70 in transcription initiation complex + Tsar – Cryo EM<br />		**[[6n57]], [[6n58]] – EcSF-70 in transcription initiation complex + Tsar – Cryo EM<br />
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	**[[7khe]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br />		**[[7khe]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br />
	**[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br />		**[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br />
	**[[7c97]] – EcSF-70 in transcription open promoter complex + ~~SSPA~~ – Cryo EM<br />		**[[6wmu]], [[7c97]], [[7dy6]] – EcSF-70 in transcription open promoter complex + SspA – Cryo EM<br />
	**[[7khi]] – EcSF-70 in transcription open promoter complex + DKSA + G4P – Cryo EM<br />		**[[7khi]] – EcSF-70 in transcription open promoter complex + DKSA + G4P – Cryo EM<br />
	**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />		**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />
			**[[6xlm]] – EcSF-70 in elongation complex – Cryo EM<br />
	**[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br />		**[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br />
	**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />		**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />
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	*Other sigma factor complex with protein, DNA and RNA		*Other sigma factor complex with protein, DNA and RNA

	**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />		**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[7mli]], [[7mlj]] – TtSF-A in reiterative transcription complex <br />
			**[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br />
	**[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br />		**[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br />
	**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial transcription complex <br />		**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial transcription complex <br />
Line 121:		Line 126:
	**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />		**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
	**[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br />		**[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br />
			**[[7eh2]], [[7mlb]] – TtSF-A in transcription initiation complex <br />
	**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />		**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
	**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />		**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />
	**[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br />		**[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br />
	**[[5x22]] – TtSF-A in transcription initiation complex + CMPPP<br />		**[[5x22]], [[7eh0]], [[7eh1]] – TtSF-A in transcription initiation complex + CMPPP<br />
	**[[5i2d]] – TtSF-A in transcription activation complex + transcriptional regulator <br />		**[[5i2d]] – TtSF-A in transcription activation complex + transcriptional regulator <br />
			**[[7f75]] – BsSF-A in transcription activation complex + transcriptional regulator – Cryo EM<br />
			**[[7ckq]] – BsSF-A in transcription activation complex + multidrug regulator + YKZG – Cryo EM<br />
	**[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br />		**[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br />
	**[[4xln]], [[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br />		**[[4xln]], [[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br />
Line 132:		Line 140:
	**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />		**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />
	**[[6dcf]] – MtSF-A in transcription initiation complex + RBPA<br />		**[[6dcf]] – MtSF-A in transcription initiation complex + RBPA<br />
	**[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]] – MtSF-A in transcription initiation complex<br />		**[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]], [[7rwi]] – MtSF-A in transcription initiation complex<br />
	**[[6c04]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />		**[[6dcf]] – MtSF-A in transcription initiation complex + RbpA<br />
			**[[6c04]], [[7kin]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
			**[[7kif]], [[7kim]] – MtSF-A + RNAP subunits α,β,β’,ω + WhiB7 + DNA - Cryo EM<br />
	**[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br />		**[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br />
	**[[6jcy]], [[6jcx]], [[5zx2]] – MtSF-H in transcription initiation complex<br />		**[[6jcy]], [[6jcx]], [[5zx2]] – MtSF-H in transcription initiation complex<br />
Line 141:		Line 151:
	**[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br />		**[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br />
	**[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />		**[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />
	**[[~~6ccv~~]] – MsSF-A in transcription initiation complex + ~~peptide~~ + ~~RbpA~~ + antibiotic<br />		**[[7p5x]] – MsSF-A in transcription initiation complex + PafBC – Cryo EM<br />
			**[[7l7b]] – SF-A + RNAP subunits α,β,β’,ω + antibiotic – Clostridia bacterium - Cryo EM<br />

	*Sigma factor complex with protein and DNA and antibiotics		*Sigma factor complex with protein and DNA and antibiotics
Line 150:		Line 161:
	**[[5uh6]], [[5uhc]], [[5uhd]], [[5uhb]] – MtSF-A in transcription initiation complex + antibiotic<br />		**[[5uh6]], [[5uhc]], [[5uhd]], [[5uhb]] – MtSF-A in transcription initiation complex + antibiotic<br />
	**[[6bzo]] – MtSF-A in transcription initiation complex + RbpA + antibiotic - Cryo EM<br />		**[[6bzo]] – MtSF-A in transcription initiation complex + RbpA + antibiotic - Cryo EM<br />
	**[[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br />		**[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic<br />
			**[[6vvt]], [[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br />
	**[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br />		**[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br />
	**[[6m7j]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + DNA + antibiotic – Cryo EM<br />		**[[6m7j]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + DNA + antibiotic – Cryo EM<br />

Sigma factor 3D structures - Revision history

Openfox: Normalize usage in #tree blocks

Openfox: Fix TreeAndMenu broken list structure

Openfox: Fix TreeAndMenu broken list structure

Joel L. Sussman at 15:39, 16 December 2023

Joel L. Sussman at 15:38, 16 December 2023

Michal Harel at 09:58, 20 November 2023

Michal Harel at 09:55, 20 November 2023

Michal Harel at 09:52, 20 November 2023

Jaime Prilusky at 08:54, 29 March 2023

Michal Harel at 07:50, 6 April 2022

Openfox: Normalize
usage in #tree blocks