Single-stranded DNA-binding protein 3D structures - Revision history

Michal Harel at 08:04, 21 November 2023

2023-11-21T08:04:13Z

← Older revision		Revision as of 08:04, 21 November 2023
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	**[[1qvc]], [[1sru]] – EcSSB <br />		**[[1qvc]], [[1sru]] – EcSSB <br />
	**[[1o7i]] – SsSSB residues 1-119 – ''Sulfolobus solfataricus''<br />		**[[1o7i]] – SsSSB residues 1-119 – ''Sulfolobus solfataricus''<br />
	**[[1ue1]], [[1ue5]], [[1ue7]], [[1ue6]] – SSB – ''Mycobacterium tuberculosis'' <br />		**[[7wcg]] – SsSSB residues 1-114 – NMR<br />
			**[[1ue1]], [[1ue5]], [[1ue7]], [[1ue6]], [[7f5y]], [[7f5z]] – SSB – ''Mycobacterium tuberculosis'' <br />
	**[[1x3e]], [[1x3f]], [[1x3g]], [[5gqo]] – MsSSB – ''Mycobacterium smegmatis'' <br />		**[[1x3e]], [[1x3f]], [[1x3g]], [[5gqo]] – MsSSB – ''Mycobacterium smegmatis'' <br />
	**[[1se8]] – DrSSB – ''Deinococcus radiodurans'' <br />		**[[1se8]] – DrSSB – ''Deinococcus radiodurans'' <br />
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	**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa''<br />		**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa''<br />
	**[[7f2n]] – SSB – ''Klebsiella pneumoniae'' <br />		**[[7f2n]] – SSB – ''Klebsiella pneumoniae'' <br />
			**[[7f25]] – SSB – ''Salmonella enterica'' <br />
			**[[7r4w]] – SSB – ''Fervidobacterium gondwanense''<br />

	*Single-stranded DNA-binding protein complex with ssDNA		*Single-stranded DNA-binding protein complex with ssDNA
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	**[[5yun]] – PaSSB + myricetin <br />		**[[5yun]] – PaSSB + myricetin <br />
	**[[7vum]] – PaSSB + que <br />		**[[7vum]] – PaSSB + que <br />
	**[[7d8j]], [[7dep]] – ~~SSB~~ + fluorouracil – ''Staphylococcus aureus'' <br />		**[[7d8j]], [[7dep]] – SaSSB + fluorouracil – ''Staphylococcus aureus'' <br />
			**[[7ym1]] – SaSSA + fluorouracil <br />
			**[[8gw5]] – SaSSA + glycerol <br />

	*Replication protein A70		*Replication protein A70
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	**[[5n8a]] - hRPA70 N terminal (mutant) + PrimPol<br />		**[[5n8a]] - hRPA70 N terminal (mutant) + PrimPol<br />
	**[[4ijh]], [[4ijl]], [[4iph]], [[4luo]], [[4luv]], [[4luz]], [[4lw1]], [[4lwc]], [[4o0a]], [[4r4c]], [[4r4i]], [[4r4o]], [[4r4q]], [[4r4t]], [[5e7n]] - hRPA70 N terminal (mutant) + inhibitor<br />		**[[4ijh]], [[4ijl]], [[4iph]], [[4luo]], [[4luv]], [[4luz]], [[4lw1]], [[4lwc]], [[4o0a]], [[4r4c]], [[4r4i]], [[4r4o]], [[4r4q]], [[4r4t]], [[5e7n]] - hRPA70 N terminal (mutant) + inhibitor<br />
			**[[7xv0]] - hRPA70 DNA-binding subunit + Bloom syndrome protein peptide<br />
			**[[7xuw]] - hRPA70 DNA-binding subunit/Bloom syndrome protein peptide<br />
			**[[7xut]] - hRPA70 DNA-binding subunit/Werner syndrome helicase peptide<br />
			**[[8k00]] - hRPA70 DNA-binding subunit + MRE11 peptide<br />
			**[[7xv4]] - hRPA70 DNA-binding subunit + ATRIP peptide<br />
			**[[7xv1]] - hRPA70 DNA-binding subunit + DNA helicase B peptide<br />
			**[[8jzy]] - hRPA70 DNA-binding subunit + Rad9A peptide<br />
			**[[8jzv]] - hRPA70 DNA-binding subunit + Ewing’s tumor-associated antigen peptide<br />
	**[[1ynx]] – yRPA69 DBD-A – NMR<br />		**[[1ynx]] – yRPA69 DBD-A – NMR<br />
			**[[8b4j]], [[8b4k]] – yRPA1 <br />
	**[[6i52]] – yRPA1 + yRPA2 + yRPA3 + ssDNA – Cryo EM <br />		**[[6i52]] – yRPA1 + yRPA2 + yRPA3 + ssDNA – Cryo EM <br />

Michal Harel at 09:48, 6 April 2022

2022-04-06T09:48:06Z

← Older revision		Revision as of 09:48, 6 April 2022
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	**[[6bhw]] – BsSSB – ''Bacillus subtilis''<br />		**[[6bhw]] – BsSSB – ''Bacillus subtilis''<br />
	**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa''<br />		**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa''<br />
			**[[7f2n]] – SSB – ''Klebsiella pneumoniae'' <br />

	*Single-stranded DNA-binding protein complex with ssDNA		*Single-stranded DNA-binding protein complex with ssDNA
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	**[[3ufm]], [[3uf7]] – DrSSB C terminal + uracil-DNA glycosylase <br />		**[[3ufm]], [[3uf7]] – DrSSB C terminal + uracil-DNA glycosylase <br />
	**[[5yun]] – PaSSB + myricetin <br />		**[[5yun]] – PaSSB + myricetin <br />
			**[[7vum]] – PaSSB + que <br />
			**[[7d8j]], [[7dep]] – SSB + fluorouracil – ''Staphylococcus aureus'' <br />

	*Replication protein A70		*Replication protein A70

Michal Harel: New page: == 3D Structures of single-stranded DNA-binding protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Single-...

2020-02-09T08:21:16Z

New page: == 3D Structures of single-stranded DNA-binding protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Single-...

New page

== 3D Structures of single-stranded DNA-binding protein ==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*Single-stranded DNA-binding protein

**[[3ull]], [[1s3o]], [[2dud]] – HsmtSSB residues 16-148 – human 
**[[5d8e]], [[5d8f]] – hSSB residues 1-109 (mutant) 
**[[6iwv]] – hSSB 2 residues 10-77 
**[[6s9r]] – SSB – ''Drosophila melanogaster'' 
**[[6cqk]], [[6cqm]], [[6cqo]] – ySSB N terminal domain - yeast 
**[[5m1x]] – ySSB N-OB domain (mutant) 
**[[1gpc]] – SSB gp32 – Enterobacteria phage T4 
**[[2a1k]] – SSB gp32 – Enterobacteria phage RB69 
**[[1je5]] – SSB – Enterobacteria phage T7 
**[[5odk]], [[5odj]] – Enc34SSB – Enterobacteria phage Enc34 
**[[1vqe]], [[1yha]], [[1vqb]] – F1SSB – Enterobacteria phage F1 
**[[1vqa]], [[1vqc]], [[1vqd]], [[1vqe]], [[1vqf]], [[1vqg]], [[1vqh]], [[1vqi]], [[1vqj]], [[1ae2]], [[1ae3]], [[1gkh]] – F1SSB (mutant) 
**[[2gn5]] – M13SSB – Enterobacteria phage M13 
**[[2gva]], [[2gvb]] – M13SSB (mutant) - NMR 
**[[1adu]], [[1adv]], [[1anv]], [[2waz]], [[2wb0]] – SSB C terminal – human adenovirus 5 
**[[1urj]] – SSB – human herpesvirus 1 
**[[1pfs]] – SSB (mutant) – Pseudomonas phage PF3 - NMR 
**[[1kaw]] – EcSSB chymotryptic domain – ''Escherichia coli'' 
**[[1qvc]], [[1sru]] – EcSSB 
**[[1o7i]] – SsSSB residues 1-119 – ''Sulfolobus solfataricus'' 
**[[1ue1]], [[1ue5]], [[1ue7]], [[1ue6]] – SSB – ''Mycobacterium tuberculosis'' 
**[[1x3e]], [[1x3f]], [[1x3g]], [[5gqo]] – MsSSB – ''Mycobacterium smegmatis'' 
**[[1se8]] – DrSSB – ''Deinococcus radiodurans'' 
**[[4exw]] – SSB DdrB – ''Deinococcus geothermalis'' 
**[[1z9f]] – SSB – ''Thermotoga maritima'' 
**[[2cwa]] – SSB – ''Thermus thermophilus'' 
**[[2fxq]], [[2ihe]] – TaSSB – ''Thermus aquaticus'' 
**[[2ihf]] – TaSSB (mutant) 
**[[2hql]] – SSB – ''Mycoplasma pneumoniae'' 
**[[3eiv]] – ScSSB – ''Streptomyces coelicolor'' 
**[[4dam]] – ScSSB (mutant) 
**[[3lgj]], [[3pgz]] – SSB – ''Bartonella henselae'' 
**[[3afp]], [[3afq]] – SSB – ''Mycobacterium leprae'' 
**[[3tqy]] – SSB – ''Coxiella burnetii'' 
**[[3tek]] – SSB N terminal – ''Thermoproteus tenax'' 
**[[4gs3]] – SSB N terminal – ''Thermoanaerobacter tengcongensis'' 
**[[3dm3]] – SSB A domain – ''Methancaldococcus jannaschii'' 
**[[5xgt]], [[5yyu]] – SSB N-terminal – ''Staphylococcus aureus'' 
**[[6bhw]] – BsSSB – ''Bacillus subtilis'' 
**[[5yuo]] – PaSSB – ''Pseudomonas aeruginosa'' 

*Single-stranded DNA-binding protein complex with ssDNA

**[[1eyg]] – EcSSB chymotryptic domain + ssDNA 
**[[1eqq]] – EcSSB + ssDNA 
**[[2vw9]] – HpSSB + ssDNA 
**[[3vdy]], [[6bhx]] – BsSSB + ssDNA 
**[[3a5u]] – MsSSB chymotryptic domain + ssDNA 
**[[3udg]] – DrSSB + ssDNA 
**[[2mna]] – SsSSB + ssDNA - NMR 
**[[6jdg]], [[6irq]] – PaSSB + ssDNA 
**[[5odn]] – SrSSB + ssDNA - ''Salinibacter ruber'' 
**[[5odp]] – SrSSB (mutant) + ssDNA 
**[[5odl]] – Enc34SSB + ssDNA 

*Other single-stranded DNA-binding protein complexes

**[[6rup]] – hSSB residues 16-148 + peptide 
**[[6tyd]] – hSSB 2 residues 1-94 + LDB1 
**[[3ufm]], [[3uf7]] – DrSSB C terminal + uracil-DNA glycosylase 
**[[5yun]] – PaSSB + myricetin 

*Replication protein A70

**[[1l1o]] – hRPA14 + hRPA32 central domain + hRPA70 C terminal 
**[[1ewi]], [[2b29]] - hRPA70 N terminal - NMR 
**[[4ipc]], [[4ipd]], [[4ipg]] - hRPA70 N terminal (mutant) 
**[[1fgu]] – hRPA70 central domain 
**[[1jmc]] – hRPA70 central domain + DNA 
**[[2b3g]] - hRPA70 N terminal + p53 peptide 
**[[5eay]] - hRPA70 N terminal + DNA2 peptide 
**[[4nb3]], [[5n85]] - hRPA70 N terminal (mutant) + peptide 
**[[5n8a]] - hRPA70 N terminal (mutant) + PrimPol 
**[[4ijh]], [[4ijl]], [[4iph]], [[4luo]], [[4luv]], [[4luz]], [[4lw1]], [[4lwc]], [[4o0a]], [[4r4c]], [[4r4i]], [[4r4o]], [[4r4q]], [[4r4t]], [[5e7n]] - hRPA70 N terminal (mutant) + inhibitor 
**[[1ynx]] – yRPA69 DBD-A – NMR 
**[[6i52]] – yRPA1 + yRPA2 + yRPA3 + ssDNA – Cryo EM 

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