Teaching Scenes, Tutorials, and Educators' Pages - Revision history

Jaime Prilusky: /* Molecule of the Month (MotM) Series */

2026-01-09T05:19:00Z

Molecule of the Month (MotM) Series

← Older revision		Revision as of 05:19, 9 January 2026
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	==Molecule of the Month (MotM) Series==		==Molecule of the Month (MotM) Series==

	The '''[~~http://http~~://pdb101.rcsb.org/ Molecule of the Month]''' series of tutorials by [[User:David_S._Goodsell\|David Goodsell]] offers a wealth of molecular structure information, beautifully explained and illustrated, for student and educators. Beginning with the August, 2008 molecule, Goodsell has begun writing Proteopedia pages to complement his articles. For a complete list of Proteopedia pages in this Category see [[:Category:RCSB_PDB_Molecule_of_the_Month\|RCSB PDB Molecule of the Month]].		The '''[https://pdb101.rcsb.org/motm/motm-by-date Molecule of the Month]''' series of tutorials by [[User:David_S._Goodsell\|David Goodsell]] offers a wealth of molecular structure information, beautifully explained and illustrated, for student and educators. Beginning with the August, 2008 molecule, Goodsell has begun writing Proteopedia pages to complement his articles. For a complete list of Proteopedia pages in this Category see [[:Category:RCSB_PDB_Molecule_of_the_Month\|RCSB PDB Molecule of the Month]].

	<!-- SINCE THIS TABLE HAS NOT BEEN MAINTAINED SINCE 2009 I AM HIDING IT. ERIC MARTZ JANUARY 2019.		<!-- SINCE THIS TABLE HAS NOT BEEN MAINTAINED SINCE 2009 I AM HIDING IT. ERIC MARTZ JANUARY 2019.

Ann Taylor: /* Concepts */

2022-09-11T19:40:28Z

Concepts

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	*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond representations, and common color schemes.		*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond representations, and common color schemes.

	*[[Introduction to Protein Structure~~\|Protein Structure, Introduction to~~]]--a basic introduction to protein structure and includes questions and measurements for students to consider.		*[[Introduction to Protein Structure]]--a basic introduction to protein structure and includes questions and measurements for students to consider.

	*[[Ozonolysis]] an example of a chemical reaction.		*[[Ozonolysis]] an example of a chemical reaction.

Ann Taylor: /* Concepts */

2022-09-11T19:39:44Z

Concepts

← Older revision		Revision as of 19:39, 11 September 2022
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	See a longer list at [[About Macromolecular Structure]] which includes topics of a more technical nature.		See a longer list at [[About Macromolecular Structure]] which includes topics of a more technical nature.

			*[[Basics of Protein Structure]] introduces primary, secondary, tertiary and quaternary structure at an advanced high school or introductory college level.

	*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.		*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.

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	*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.		*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.


	*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.

	*[[Four levels of protein structure]]: slides illustrating primary, secondary, tertiary, and quaternary structure levels. Also in Spanish: [[Four levels of protein structure (Spanish)\|Los cuatro niveles estructurales de las proteínas]].		*[[Four levels of protein structure]]: slides illustrating primary, secondary, tertiary, and quaternary structure levels. Also in Spanish: [[Four levels of protein structure (Spanish)\|Los cuatro niveles estructurales de las proteínas]].

	* [[Intrinsically Disordered Protein]]		* [[Intrinsically Disordered Protein]]

			*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.

	*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond representations, and common color schemes.		*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond representations, and common color schemes.

Joel L. Sussman at 09:08, 28 February 2019

2019-02-28T09:08:26Z

← Older revision		Revision as of 09:08, 28 February 2019
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	*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.		*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.

	*[[Ozonolysis]] an example of a chemical reaction.

	*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.		*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.
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	*[[Introduction to Protein Structure\|Protein Structure, Introduction to]]--a basic introduction to protein structure and includes questions and measurements for students to consider.		*[[Introduction to Protein Structure\|Protein Structure, Introduction to]]--a basic introduction to protein structure and includes questions and measurements for students to consider.

			*[[Ozonolysis]] an example of a chemical reaction.

	*[[Dihedral/Index\|Ramachandran Principle and Phi/Psi Angles]]. This page list several tutorials, some in Spanish. One of the tutorials is available as a [http://tinyurl.com/RamachandranPrincipleYoutube narrated '''YouTube''' video], and as a slideshow in [http://tinyurl.com/RamachandranPrinciple English] or [http://tinyurl.com/PrincipioRamachandran Spanish].		*[[Dihedral/Index\|Ramachandran Principle and Phi/Psi Angles]]. This page list several tutorials, some in Spanish. One of the tutorials is available as a [http://tinyurl.com/RamachandranPrincipleYoutube narrated '''YouTube''' video], and as a slideshow in [http://tinyurl.com/RamachandranPrinciple English] or [http://tinyurl.com/PrincipioRamachandran Spanish].

Joel L. Sussman at 09:07, 28 February 2019

2019-02-28T09:07:44Z

← Older revision		Revision as of 09:07, 28 February 2019
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	*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.		*[[Chains]]. Many students have difficulty explaining what is a macromolecular "chain" and what are its properties. This page will help.

			*[[Ozonolysis]] an example of a chemical reaction.

	*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.		*[[Introduction to Evolutionary Conservation\|Evolutionary Conservation, Introduction to]] explains conservation and variation using Rett's Syndrome as an extreme example, multiple sequence alignments and coloring proteins by conservation (ConSurf) using enolase as an example.

Joel L. Sussman at 06:54, 28 February 2019

2019-02-28T06:54:31Z

← Older revision		Revision as of 06:54, 28 February 2019
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	*[[Beta-Prime Subunit of Bacterial RNA Polymerase\|RNA Polymerase, bacterial, beta-prime subunit]]		*[[Beta-Prime Subunit of Bacterial RNA Polymerase\|RNA Polymerase, bacterial, beta-prime subunit]]

			*[[Ribosome]]

	*[[Large Ribosomal Subunit of Haloarcula\|Ribosome, large subunit, haloarcula]] featured in [[:Category:Featured in BAMBED\|''Biochemistry and Molecular Biology Education]].		*[[Large Ribosomal Subunit of Haloarcula\|Ribosome, large subunit, haloarcula]] featured in [[:Category:Featured in BAMBED\|''Biochemistry and Molecular Biology Education]].

Joel L. Sussman at 04:39, 28 February 2019

2019-02-28T04:39:09Z

← Older revision		Revision as of 04:39, 28 February 2019
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	*Nucleosomes: [[User:Eric Martz/Nucleosomes]]: Slides of nucleosome structure designed for, and used in, the majors' biochemistry class (Biochm 524). The same slides were copied into the non-protected page [[Nucleosomes]], where they are freely editable (and the color scheme was improved). (University of Massachusetts, Amherst MA US)		*Nucleosomes: [[User:Eric Martz/Nucleosomes]]: Slides of nucleosome structure designed for, and used in, the majors' biochemistry class (Biochm 524). The same slides were copied into the non-protected page [[Nucleosomes]], where they are freely editable (and the color scheme was improved). (University of Massachusetts, Amherst MA US)

	* [[Pharmaceutical Drugs]]		*[[Pharmaceutical Drugs]]

	* [[Prion protein]]		*[[Pharmaceutical Drug Targets and Diseases]]

			*[[Prion protein]]

	*[[Beta-Prime Subunit of Bacterial RNA Polymerase\|RNA Polymerase, bacterial, beta-prime subunit]]		*[[Beta-Prime Subunit of Bacterial RNA Polymerase\|RNA Polymerase, bacterial, beta-prime subunit]]

Joel L. Sussman at 04:38, 28 February 2019

2019-02-28T04:38:08Z

← Older revision		Revision as of 04:38, 28 February 2019
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	*Nucleosomes: [[User:Eric Martz/Nucleosomes]]: Slides of nucleosome structure designed for, and used in, the majors' biochemistry class (Biochm 524). The same slides were copied into the non-protected page [[Nucleosomes]], where they are freely editable (and the color scheme was improved). (University of Massachusetts, Amherst MA US)		*Nucleosomes: [[User:Eric Martz/Nucleosomes]]: Slides of nucleosome structure designed for, and used in, the majors' biochemistry class (Biochm 524). The same slides were copied into the non-protected page [[Nucleosomes]], where they are freely editable (and the color scheme was improved). (University of Massachusetts, Amherst MA US)

			* [[Pharmaceutical Drugs]]

	* [[Prion protein]]		* [[Prion protein]]

Joel L. Sussman at 04:08, 28 February 2019

2019-02-28T04:08:41Z

← Older revision		Revision as of 04:08, 28 February 2019
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	===Concepts===		===Concepts===
	See a longer list at [[About Macromolecular Structure]] which includes topics of a more technical nature.		See a longer list at [[About Macromolecular Structure]] which includes topics of a more technical nature.

	* [[Introduction to Evolutionary Conservation]] introduction to protein evolution and function

	*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.		*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.

Joel L. Sussman at 04:03, 28 February 2019

2019-02-28T04:03:58Z

← Older revision		Revision as of 04:03, 28 February 2019
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	* [[Introduction to Evolutionary Conservation]] introduction to protein evolution and function		* [[Introduction to Evolutionary Conservation]] introduction to protein evolution and function


	*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.		*[[Backbone representations]] introduces standard ways of simplifying the main chain of proteins interactively in JSmol.
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	*[[Four levels of protein structure]]: slides illustrating primary, secondary, tertiary, and quaternary structure levels. Also in Spanish: [[Four levels of protein structure (Spanish)\|Los cuatro niveles estructurales de las proteínas]].		*[[Four levels of protein structure]]: slides illustrating primary, secondary, tertiary, and quaternary structure levels. Also in Spanish: [[Four levels of protein structure (Spanish)\|Los cuatro niveles estructurales de las proteínas]].

	* [[Intrinsically Disordered Protein ]]		* [[Intrinsically Disordered Protein]]

	*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond ~~representions~~, and common color schemes.		*[[Introduction to molecular visualization\|Molecular Visualization, Introduction to]]: introduces atomic representations (ball and stick, stick, spacefilling), slabbing, backbone representations, disulfide bond representations, and common color schemes.

	*[[Introduction to Protein Structure\|Protein Structure, Introduction to]]--a basic introduction to protein structure and includes questions and measurements for students to consider.		*[[Introduction to Protein Structure\|Protein Structure, Introduction to]]--a basic introduction to protein structure and includes questions and measurements for students to consider.
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	*[[Group:USC-LCHS\|Readout of DNA minor groove shape is the molecular basis for Hox specificity]]		*[[Group:USC-LCHS\|Readout of DNA minor groove shape is the molecular basis for Hox specificity]]

			*[[Resolution]] What is the meaning of '''resolution''' in an X-ray structure determination?

	*[[Rossmann fold]] featured in [[:Category:Featured in BAMBED\|''Biochemistry and Molecular Biology Education]].		*[[Rossmann fold]] featured in [[:Category:Featured in BAMBED\|''Biochemistry and Molecular Biology Education]].