User:Wayne Decatur/mof dev - Revision history

Wayne Decatur: add additional spacefill toggle

2025-10-12T21:16:19Z

add additional spacefill toggle

@@ Line 44: / Line 44: @@
    <!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
    <text>Toggle to limit to what is in just key cell vs. current lattice network context</text>
   </jmolCheckbox>
 </jmol>

Wayne Decatur: improve lattice scene

2025-10-12T21:14:48Z

improve lattice scene

← Older revision		Revision as of 21:14, 12 October 2025
Line 43:		Line 43:
	<checked>false</checked>		<checked>false</checked>
	<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->		<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
	<text>Toggle just key cell vs. current lattice network context</text>		<text>Toggle to limit to what is in just key cell vs. current lattice network context</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>		</jmol>

Wayne Decatur: improve lattice scene

2025-10-12T21:11:03Z

improve lattice scene

← Older revision		Revision as of 21:11, 12 October 2025
Line 43:		Line 43:
	<checked>false</checked>		<checked>false</checked>
	<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->		<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
	<text>Toggle ~~central~~ cell/lattice</text>		<text>Toggle just key cell vs. current lattice network context</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>		</jmol>

Wayne Decatur: improve lattice scene

2025-10-12T19:44:04Z

improve lattice scene

← Older revision		Revision as of 19:44, 12 October 2025
Line 39:		Line 39:
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>~~display~~ all;</scriptWhenChecked>		<scriptWhenChecked>hide all and not cell=555;</scriptWhenChecked>
	<scriptWhenUnchecked>~~hide~~ all ~~and not cell=555~~;</scriptWhenUnchecked>		<scriptWhenUnchecked>display all;</scriptWhenUnchecked>
	<checked>false</checked>		<checked>false</checked>
	<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->		<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->

Wayne Decatur: improve lattice scene

2025-10-12T19:42:12Z

improve lattice scene

← Older revision		Revision as of 19:42, 12 October 2025
Line 37:		Line 37:
	<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.

	~~<scene name='10/1092924/Csd_entry_jarmeu_lattice/5'>Restrict to only the central cell of the 1x4x6 lattice</scene>.~~
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>display all;</scriptWhenChecked>		<scriptWhenChecked>display all;</scriptWhenChecked>
	<scriptWhenUnchecked>~~restrict~~ cell=555;</scriptWhenUnchecked>		<scriptWhenUnchecked>hide all and not cell=555;</scriptWhenUnchecked>
	<checked>false</checked>		<checked>false</checked>
	<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->		<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
	<text>Toggle ~~back on~~ lattice</text>		<text>Toggle central cell/lattice</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>		</jmol>

Wayne Decatur: make accurate about set since I started with something different in jmol crystal symmetry explorer

2025-10-12T19:25:57Z

make accurate about set since I started with something different in jmol crystal symmetry explorer

← Older revision		Revision as of 19:25, 12 October 2025
Line 30:		Line 30:

	When the repeats of this 4-connected network building block are shown connected to others, the crystalline lattice appears.<br/>		When the repeats of this 4-connected network building block are shown connected to others, the crystalline lattice appears.<br/>
	Viewing the <scene name='10/1092924/Csd_entry_jarmeu_1x1x3_set/4'>the CSD entry JARMEU as a ~~1x1x3~~ set of the metal organic framework</scene> illustrates this.<br/>		Viewing the <scene name='10/1092924/Csd_entry_jarmeu_1x1x3_set/4'>the CSD entry JARMEU as a 1x3x3 set of the metal organic framework</scene> illustrates this.<br/>
	The large cavities are visible as the lattice layers onto itself as the view of the structure rotates. <br/>		The large cavities are visible as the lattice layers onto itself as the view of the structure rotates. <br/>
	The cavities would contain anions and solvent that are not shown in this crystal structure as they'd be freely moving and randomly distributed.		The cavities would contain anions and solvent that are not shown in this crystal structure as they'd be freely moving and randomly distributed.

Wayne Decatur: improve lattice scene

2025-10-12T19:22:51Z

improve lattice scene

← Older revision		Revision as of 19:22, 12 October 2025
Line 37:		Line 37:
	<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.

	<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/5'>Restrict to only the central cell of the 1x4x6 lattice</scene>.
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>

Wayne Decatur: improve lattice scene

2025-10-12T19:20:37Z

improve lattice scene

← Older revision		Revision as of 19:20, 12 October 2025
Line 35:		Line 35:

	The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>		The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>
	<scene name='10/1092924/Csd_entry_jarmeu_lattice/3'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.

	<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.

Wayne Decatur: improve lattice scene

2025-10-12T19:18:20Z

improve lattice scene

← Older revision		Revision as of 19:18, 12 October 2025
Line 37:		Line 37:
	<scene name='10/1092924/Csd_entry_jarmeu_lattice/3'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/3'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.

	<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.		<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.
			<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>display all;</scriptWhenChecked>
			<scriptWhenUnchecked>restrict cell=555;</scriptWhenUnchecked>
			<checked>false</checked>
			<!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
			<text>Toggle back on lattice</text>
			</jmolCheckbox>
			</jmol>

	<jmol>		<jmol>

Wayne Decatur: add better lattice

2025-10-12T19:14:05Z

add better lattice

← Older revision		Revision as of 19:14, 12 October 2025
Line 35:		Line 35:

	The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>		The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>
	<scene name='10/1092924/~~Csd_entry_jarmeu_1x3x3_plane~~/4'>The CSD entry JARMEU as a ~~1x3x3 plane~~ of the metal organic framework</scene>. ~~(Substantial patience required when loading this~~ scene~~; it is suggested~~ to only ~~do that after you have examined~~ the ~~others~~.)		<scene name='10/1092924/Csd_entry_jarmeu_lattice/3'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.

			<scene name='10/1092924/Csd_entry_jarmeu_lattice/2'>Restrict to only the central cell of the 1x4x6 lattice</scene>.

	<jmol>		<jmol>