Sandbox 85: Difference between revisions
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<table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td>Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu).</td></tr> | <table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td>Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu).</td></tr> | ||
This is '''myoglobin'''. | |||
{{STRUCTURE_1a6m | PDB=1a6m | SCENE=Sandbox_85/Myoglobin_overview/3 }} | {{STRUCTURE_1a6m | PDB=1a6m | SCENE=Sandbox_85/Myoglobin_overview/3 }} | ||
<scene name='Sandbox_85/Myoglobin_overview/3'>Original View</scene><br> | <scene name='Sandbox_85/Myoglobin_overview/3'>Original View</scene><br> | ||
<scene name='Sandbox_85/Secondary_structure/ | <scene name='Sandbox_85/Secondary_structure/2'>Secondary Structure</scene><br> | ||
<scene name='Sandbox_85/Heme_closeup/1'>Heme closeup</scene><br> | |||
<scene name='Sandbox_85/Heme_closeup/2'>Iron ligands</scene><br> | |||
<scene name='Sandbox_85/Helixes/1'>Pink Helixes</scene><br> | |||
<scene name='Sandbox_85/Heme_zoomed/1'>Heme Only</scene><br> | |||
<scene name='Sandbox_85/Plx_4032/1'>JD needs this</scene> | |||
<scene name='3og7/Superposition/5'>Overall superposition of LepA and EF-G.</scene> <small>Note that the individual domains of <font color = 'lime'>'''LepA'''</font> and <font color = 'mediumpurple'>'''EF-G'''</font>, such as III V, superimpose much better when done separately (shown in [http://www.pnas.org/content/105/12/4673/F2.expansion.html figure 2] of [http://www.pnas.org/content/105/12/4673.long the paper] describing the structure).</small> | |||
<applet load='1a6m' size='500' color='white' frame='true' align='right' caption='testcaption' /> | <applet load='1a6m' size='500' color='white' frame='true' align='right' caption='testcaption' /> | ||
Latest revision as of 02:11, 5 October 2010
This is myoglobin.
| Please do NOT make changes to this Sandbox until after December 15, 2009. Sandboxes 85-115 are reserved until then for use by the Biochemistry 451 class at Capital University taught by Prof. Jens Hemmingsen (jhemming@capital.edu). |
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| 1a6m, resolution 1.00Å (default scene) | |||||||||||||
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| Ligands: | HEM, OXY, SO4 | ||||||||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Original View
Secondary Structure
Heme closeup
Iron ligands
Pink Helixes
Heme Only
JD needs this
Overall superposition of LepA and EF-G. Note that the individual domains of LepA and EF-G, such as III V, superimpose much better when done separately (shown in figure 2 of the paper describing the structure).
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