Group:SMART:2010 Pingry SMART Team Models: Difference between revisions
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'''Return to 2010 SMART Team Page:''' [[2010 Pingry SMART Team]] | <StructureSection load='AdhD_with_three_cofactors_no_H.pdb' size='450' side='right' scene='2010_Pingry_SMART_Team/Adhd_final_default/2' caption=''> | ||
'''Return to 2010 SMART Team Page:''' [[Group:SMART:2010 Pingry SMART Team | 2010 Pingry SMART Team]] | |||
{{Clear}} | {{Clear}} | ||
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== AdhD K249G/H255R double mutant == | == AdhD K249G/H255R double mutant == | ||
'''Design description''' | '''Design description''' | ||
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Residues involved in cofactor binding and commonly seen in AKR's have sidechains highlighted: S251, N252, and H255R. | Residues involved in cofactor binding and commonly seen in AKR's have sidechains highlighted: S251, N252, and H255R. | ||
<scene name='2010_Pingry_SMART_Team/Adhd_final_default_nad/2'>Show NAD</scene> | <scene name='2010_Pingry_SMART_Team/Adhd_final_default_nad/2'>Show NAD</scene> | ||
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{{Clear}} | {{Clear}} | ||
==PDB ID: [[1m9h]], Mutant 2,5-diketo-d-gluconic acid reductase with NADH (mutant)== | |||
==PDB ID: 1m9h, Mutant 2,5-diketo-d-gluconic acid reductase with NADH (mutant)== | <scene name='2010_Pingry_SMART_Team_Models/1m9h_final/3'>Mutant 2,5-diketo-d-gluconic acid reductase with NADH</scene> | ||
< | |||
'''Design description''' | '''Design description''' | ||
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{{Clear}} | {{Clear}} | ||
==PDB ID: [[1mi3]], Xylose reductase with NAD+== | |||
<scene name='2010_Pingry_SMART_Team_Models/1mi3_final/7'>Xylose reductase with NAD+</scene> | |||
'''Design description''' | '''Design description''' | ||
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{{Clear}} | {{Clear}} | ||
==PDB ID: 1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone== | ==PDB ID: [[1afs]], Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone== | ||
<scene name='2010_Pingry_SMART_Team_Models/1afs_final2/1'>Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone</scene> | |||
'''Model description''' | |||
'''Model script''' | |||
select all | select all | ||
backbone off | backbone off | ||
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select sheet | select sheet | ||
select (188-191) or (162-166) or (113-115) or (81-84) or (49-52) or (19-22) or (267-270) or (212-216) | |||
color [255,128,128] | color [255,128,128] | ||
select 274-284 or | select 274-284 or 252-263 or 200-209 or 170-178 or 145-156 or 92-106 or 58-71 or 31-44 | ||
color [128, 128, 192] | color [128, 128, 192] | ||
| Line 320: | Line 317: | ||
wireframe 250 | wireframe 250 | ||
select (54 or 86 or 118 or 120 or 122 or 128 or 129 or 137 or 139 or 227) and (sidechain) | |||
color cpk | color cpk | ||
| Line 342: | Line 341: | ||
wireframe 250 | wireframe 250 | ||
select (276 or 273 or 271 or 216) and (sidechain) | |||
color cpk | |||
select (24 or 166 or 167 or 190 or 216 or 219 or 221 or 270 or 271 or 272 or 276 or 273) and (alpha) | select (24 or 166 or 167 or 190 or 216 or 219 or 221 or 270 or 271 or 272 or 276 or 273) and (alpha) | ||
color [255,128,0] | color [255,128,0] | ||
select 116-142 and backbone | select 116-142 and backbone | ||
| Line 359: | Line 358: | ||
color [0,0,255] | color [0,0,255] | ||
Select 1 | |||
Color [0,0,128] | Color [0,0,128] | ||
| Line 366: | Line 365: | ||
Color [128,0,0] | Color [128,0,0] | ||
{{Clear}} | {{Clear}} | ||
