Remixing: Difference between revisions

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=== Finding the scene block ===

Let's say you want to reuse a 3D scene you found on an existing Proteopedia page. To remix the 3D scene, you need the scene block for the scene, that looks like this <span style='background-color:#cecece;'><scene name='77/778334/A_chain/1'>green link text</scene></span>. Go into the edit tab of the source page and look for the 'scene' tags.

Let's say you want to reuse a 3D scene you found on an existing Proteopedia page. To remix the 3D scene, you need the scene block for the scene, that looks like this <span style='background-color:#cecece;'><scene name='77/778334/A_chain/1'>green link text</scene></span>. Go into the edit tab of the source page and look for the 'scene' tags. Once you have copied the information, cancel the edit of the existing Proteopedia page.

=== Using the scene as is ===

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# Here is the <scene name='86/860406/Hairpin_morph/1'>beta hairpin folding morph</scene>. The original is in a Jmol window on ~~a separate~~ web page (see attribution at end of article). The coordinates were uploaded to ~~proteopedia~~ [[Image:Hairpin3anim.pdb]], and the state file used in the original was run on these coordinates to create the scene in the scene authoring tool of Proteopedia.

# Here is the <scene name='86/860406/Hairpin_morph/1'>beta hairpin folding morph</scene>. The original is in a Jmol window on an external web page (ChemTube3D, see attribution at end of article). The coordinates were uploaded to Proteopedia ([[Image:Hairpin3anim.pdb]]), and the state file used in the original was run on these coordinates to create the scene in the scene authoring tool of Proteopedia.

# Here is the <scene name='86/860406/1hhb_helix/1'>alpha helix</scene>. This is directly used from the [[alpha helix]] page.

# And here we go to <scene name='86/860406/Complex/1'>1D66</scene>. Another example of a scene from the [[alpha helix]] page.

~~The following items are for testing. I am copying the scene directly from another page without using the SAT. The question is whether I have access to them in the SAT.~~

~~From "Kisker lab: 5B5Q": <scene name='78/781027/Panela/3'>Panel A:</scene> (originated from User:Karsten_Theis/5B5Q; unable to load with anything I tried)~~

~~From "Green Fluorescent Protein": <scene name='10/100139/Chromophore/5'>Chromophore</scene> (able to load by specifying page name)~~

~~From "Insulin": <scene name='82/821037/Spacefilling/2'>surface of insulin</scene> (unable to load, originated from User:Karsten_Theis/Insulin; loads when I enter the old page name)~~

</StructureSection>

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@@ Line 18: / Line 18: @@
 === Finding the scene block ===
-Let's say you want to reuse a 3D scene you found on an existing Proteopedia page. To remix the 3D scene, you need the scene block for the scene, that looks like this <span style='background-color:#cecece;'>&lt;scene name='77/778334/A_chain/1'>green link text&lt;/scene></span>. Go into the edit tab of the source page and look for the 'scene' tags.
+Let's say you want to reuse a 3D scene you found on an existing Proteopedia page. To remix the 3D scene, you need the scene block for the scene, that looks like this <span style='background-color:#cecece;'>&lt;scene name='77/778334/A_chain/1'>green link text&lt;/scene></span>. Go into the edit tab of the source page and look for the 'scene' tags. Once you have copied the information, cancel the edit of the existing Proteopedia page.
 === Using the scene as is ===
@@ Line 68: / Line 68: @@
 <StructureSection load='3rec' size='350' side='right' caption='Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])' scene=''>
-# Here is the <scene name='86/860406/Hairpin_morph/1'>beta hairpin folding morph</scene>. The original is in a Jmol window on a separate web page (see attribution at end of article). The coordinates were uploaded to proteopedia [[Image:Hairpin3anim.pdb]], and the state file used in the original was run on these coordinates to create the scene in the scene authoring tool of Proteopedia.
+# Here is the <scene name='86/860406/Hairpin_morph/1'>beta hairpin folding morph</scene>. The original is in a Jmol window on an external web page (ChemTube3D, see attribution at end of article). The coordinates were uploaded to Proteopedia ([[Image:Hairpin3anim.pdb]]), and the state file used in the original was run on these coordinates to create the scene in the scene authoring tool of Proteopedia.
 # Here is the <scene name='86/860406/1hhb_helix/1'>alpha helix</scene>.  This is directly used from the [[alpha helix]] page.
 # And here we go to <scene name='86/860406/Complex/1'>1D66</scene>. Another example of a scene from the [[alpha helix]] page.
-The following items are for testing. I am copying the scene directly from another page without using the SAT. The question is whether I have access to them in the SAT.
-From "Kisker lab: 5B5Q": <scene name='78/781027/Panela/3'>Panel A:</scene> (originated from User:Karsten_Theis/5B5Q; unable to load with anything I tried)
-From "Green Fluorescent Protein": <scene name='10/100139/Chromophore/5'>Chromophore</scene> (able to load by specifying page name)
-From "Insulin":  <scene name='82/821037/Spacefilling/2'>surface of insulin</scene> (unable to load, originated from User:Karsten_Theis/Insulin; loads when I enter the old page name)
 </StructureSection>