EPSP synthase: Difference between revisions

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<StructureSection load='' size='350' side='right' caption='Structure of E. coli EPSP synthase complex with shikimate-3-phosphate, the herbicide glyphosate and formic acid (PDB entry [[1g6s]])' scene='57/570585/Cv/1'>
<StructureSection load='' size='350' side='right' caption='Structure of E. coli EPSP synthase complex with shikimate-3-phosphate, the herbicide glyphosate and formic acid (PDB entry [[1g6s]])' scene='57/570585/Cv/1'>
__TOC__
== Function ==
== Function ==


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== Structural insights ==
== Structural insights ==


The enzyme has two domains, with the active site found in the interdomain cleft <scene name='57/570585/Two_domains/2'>(open conformation)</scene>.  There is a substantial structural change upon substrate binding, resulting in a <scene name='57/570585/Closed_formation/2'>closed</scene> conformation. <scene name='57/570585/Cv/3'>See animation of this process</scene>. '''Glyphosate''' (also known as '''Roundup''') occupies the <scene name='57/570585/Glyphosate_s3p/1'>binding site</scene> of the second substrate, phosphoenol pyruvate <ref>PMID:11171958</ref>.   
The enzyme has two domains, with the active site found in the interdomain cleft <scene name='57/570585/Two_domains/5'>(open conformation)</scene>.  There is a substantial structural change upon substrate binding, resulting in a <scene name='57/570585/Closed_formation/3'>closed</scene> conformation. <scene name='57/570585/Cv/9'>See animation of this process</scene>. '''Glyphosate''' (also known as '''Roundup''') occupies the <scene name='57/570585/Glyphosate_s3p/1'>binding site</scene> of the second substrate, phosphoenol pyruvate <ref>PMID:11171958</ref>.  Interestingly CP4 EPSP synthase still binds glyphosate in the absence of PEP, but a conformational change in glyphosate to accommodate a steric clash with <scene name='57/570585/Glyphosate_s3p_distance/2'>Glu 354</scene> shortens the length of glyphosate, from 7.3 angstroms to 6.67 angstroms, and changes the IC50 by a factor of over 4,000, from 2.5 micromolar to 11 millimolar. 
</StructureSection>


===3D structures of EPSP synthase ===
==3D structures of EPSP synthase ==


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
[[EPSP synthase 3D structures]]
{{#tree:id=OrganizedByTopic|openlevels=0|
</StructureSection>


*5-enolpyruvylshikimate 3-phosphate (EPSP) synthase
**[[1eps]] – EcEPSP – ''Escherichia coli''<br />
**[[1p88]], [[1p89]] - EcEPSP N terminal - NMR<br />
**[[1rf5]] - SpEPSP – ''Streptococcus pneumoniae''<br />
**[[2bjb]], [[2o15]] – MtEPSP – ''Mycobacterium tuberculosis''<br />
**[[2gg4]] – AgEPSP – ''Agrobacterium''<br />
**[[3roi]], [[3tr1]], [[4gfp]] – CbEPSP – ''Coxiella burnetii''<br />
**[[3ti2]] - VcEPSP N terminal – ''Vibrio cholerae''<br />
**[[3rmt]] – EPSP – ''Bacillus halodurans''<br />
*EPSP synthase binary complex
**[[1g6t]] - EcEPSP + S3P <br />
**[[1mi4]], [[2qfq]], [[2qfs]], [[3fjx]], [[3fk0]] - EcEPSP (mutant) + S3P <br />
**[[1q36]] - EcEPSP (mutant) + S3P derivative<br />
**[[1x8r]], [[1x8t]] - EcEPSP + intermediate <br />
**[[2aa9]] – EcEPSP + shikimate<br />
**[[2pq9]] - EcEPSP + intermediate <br />
**[[1rf4]] - SpEPSP + intermediate <br />
**[[2o0b]], [[2o0d]] - MtEPSP + S3P <br />
**[[2gg6]] - AgEPSP + S3P <br />
**[[2pqb]], [[2pqc]], [[2pqd]] - AgEPSP + intermediate <br />
**[[2o0x]] - MtEPSP + intermediate <br />
**[[2o0z]] - MtEPSP + EPS <br />
**[[4egr]] - CbEPSP + phosphoenolpyruvate<br />
*EPSP synthase ternary complex
**[[1g6s]] - EcEPSP + S3P + glyphosate<br />
**[[2qft]], [[2qfu]], [[3fjz]], [[3fk1]] - EcEPSP (mutant) + S3P + glyphosate<br />
**[[2aay]] - EcEPSP + shikimate + glyphosate<br />
**[[1rf6]] - SpEPSP + S3P + glyphosate<br />
**[[2gga]] - AgEPSP + S3P + glyphosate<br />
**[[2ggd]] - AgEPSP (mutant) + S3P + glyphosate<br />
**[[2o0e]] - MtEPSP + S3P + phosphoenolpyruvate<br />
**[[3nvs]] - VcEPSP + S3P + glyphosate <br />
**[[3slh]] - CbEPSP + S3P + glyphosate<br />
}}
== References ==
== References ==
<references/>
<references/>


[[Category:Topic Page]]
[[Category:Topic Page]]

Latest revision as of 09:03, 23 February 2023

Structure of E. coli EPSP synthase complex with shikimate-3-phosphate, the herbicide glyphosate and formic acid (PDB entry 1g6s)

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Ann Taylor, Michal Harel, Alexander Berchansky, Joel L. Sussman