5ftg: Difference between revisions

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==Design, synthesis, crystallization and biological evaluation of new symmetrical biscationic compounds as selective inhibitors of human Choline Kinase alpha1 (ChoKalpha1)==
==Human choline kinase a1 in complex with compound 1-[[4-[2-[4-[[4-(dimethylamino)pyridin-1- yl]methyl]phenoxy]ethoxy]phenyl]methyl]-N,N- dimethyl-pyridin-4-amine (compound 10a)==
<StructureSection load='5ftg' size='340' side='right' caption='[[5ftg]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='5ftg' size='340' side='right'caption='[[5ftg]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ftg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FTG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FTG FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ftg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FTG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FTG FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NBR:1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1-YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL-PYRIDIN-4-AMINE'>NBR</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ftg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ftg OCA], [http://pdbe.org/5ftg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ftg RCSB], [http://www.ebi.ac.uk/pdbsum/5ftg PDBsum]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NBR:1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1-YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL-PYRIDIN-4-AMINE'>NBR</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ftg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ftg OCA], [https://pdbe.org/5ftg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ftg RCSB], [https://www.ebi.ac.uk/pdbsum/5ftg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ftg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/CHKA_HUMAN CHKA_HUMAN]] Has a key role in phospholipid biosynthesis and may contribute to tumor cell growth. Catalyzes the first step in phosphatidylcholine biosynthesis. Contributes to phosphatidylethanolamine biosynthesis. Phosphorylates choline and ethanolamine. Has higher activity with choline.<ref>PMID:19915674</ref>
[https://www.uniprot.org/uniprot/CHKA_HUMAN CHKA_HUMAN] Has a key role in phospholipid biosynthesis and may contribute to tumor cell growth. Catalyzes the first step in phosphatidylcholine biosynthesis. Contributes to phosphatidylethanolamine biosynthesis. Phosphorylates choline and ethanolamine. Has higher activity with choline.<ref>PMID:19915674</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5ftg" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ftg" style="background-color:#fffaf0;"></div>
==See Also==
*[[Choline kinase 3D structures|Choline kinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Baglioni, E]]
[[Category: Homo sapiens]]
[[Category: Basso, G]]
[[Category: Large Structures]]
[[Category: Bortolozzi, R]]
[[Category: Baglioni E]]
[[Category: Carrasco-Jimenez, M P]]
[[Category: Basso G]]
[[Category: Entrena, A]]
[[Category: Bortolozzi R]]
[[Category: Gallo, M A]]
[[Category: Carrasco-Jimenez MP]]
[[Category: Hurtado-Guerrero, R]]
[[Category: Entrena A]]
[[Category: Lopez-Cara, L C]]
[[Category: Gallo MA]]
[[Category: Marco, C]]
[[Category: Hurtado-Guerrero R]]
[[Category: Mariotto, E]]
[[Category: Lopez-Cara LC]]
[[Category: Rios-Marco, P]]
[[Category: Marco C]]
[[Category: Schiaffino-Ortega, S]]
[[Category: Mariotto E]]
[[Category: Serran-Aguilera, L]]
[[Category: Rios-Marco P]]
[[Category: Viola, G]]
[[Category: Schiaffino-Ortega S]]
[[Category: Biscationic inhibitor]]
[[Category: Serran-Aguilera L]]
[[Category: Docking study]]
[[Category: Viola G]]
[[Category: Transferase]]

Latest revision as of 13:24, 26 July 2023

Human choline kinase a1 in complex with compound 1-[[4-[2-[4-[[4-(dimethylamino)pyridin-1- yl]methyl]phenoxy]ethoxy]phenyl]methyl]-N,N- dimethyl-pyridin-4-amine (compound 10a)

5ftg, resolution 1.45Å

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