2qj1: Difference between revisions

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[[Image:2qj1.jpg|left|200px]]


{{Structure
==Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an oligopeptide mimicking the VP3 C-terminus==
|PDB= 2qj1 |SIZE=350|CAPTION= <scene name='initialview01'>2qj1</scene>, resolution 3.480&Aring;
<StructureSection load='2qj1' size='340' side='right'caption='[[2qj1]], [[Resolution|resolution]] 3.48&Aring;' scene=''>
|SITE=
== Structural highlights ==
|LIGAND=
<table><tr><td colspan='2'>[[2qj1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Infectious_bursal_disease_virus Infectious bursal disease virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QJ1 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.48&#8491;</td></tr>
|GENE= VP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10995 Infectious bursal disease virus])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qj1 OCA], [https://pdbe.org/2qj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qj1 RCSB], [https://www.ebi.ac.uk/pdbsum/2qj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qj1 ProSAT]</span></td></tr>
}}
</table>
 
== Function ==
'''Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an oligopeptide mimicking the VP3 C-terminus'''
[https://www.uniprot.org/uniprot/RDRP_IBDV RDRP_IBDV] RNA-dependent RNA polymerase which is found both free and covalently attached to the genomic RNA. May also contain guanylyl and methyl transferase activities (By similarity).
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2QJ1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Infectious_bursal_disease_virus Infectious bursal disease virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJ1 OCA].  
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/2qj1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qj1 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Infectious bursal disease virus]]
[[Category: Infectious bursal disease virus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Abaitua, F.]]
[[Category: Abaitua F]]
[[Category: Garriga, D.]]
[[Category: Garriga D]]
[[Category: Navarro, A.]]
[[Category: Navarro A]]
[[Category: Querol-Audi, J.]]
[[Category: Querol-Audi J]]
[[Category: Rodriguez, J F.]]
[[Category: Rodriguez JF]]
[[Category: Verdaguer, N.]]
[[Category: Verdaguer N]]
[[Category: activation]]
[[Category: birnavirus]]
[[Category: ibdv]]
[[Category: infectious bursal disease virus]]
[[Category: polymerase]]
[[Category: transferase]]
[[Category: vp1]]
[[Category: vp3]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:26:23 2008''
Retrieved from "https://proteopedia.org/2qj1"