3n2b: Difference between revisions

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{{STRUCTURE_3n2b|  PDB=3n2b  |  SCENE=  }}
===1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (lysA) from Vibrio cholerae.===


==Function==
==1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (lysA) from Vibrio cholerae.==
[[http://www.uniprot.org/uniprot/DCDA_VIBCH DCDA_VIBCH]] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]  
<StructureSection load='3n2b' size='340' side='right'caption='[[3n2b]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[3n2b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N2B FirstGlance]. <br>
[[3n2b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2B OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
[[Category: Diaminopimelate decarboxylase]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
[[Category: Vibrio cholerae]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2b OCA], [https://pdbe.org/3n2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n2b RCSB], [https://www.ebi.ac.uk/pdbsum/3n2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n2b ProSAT]</span></td></tr>
[[Category: Anderson, W F.]]
</table>
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
== Function ==
[[Category: Dubrovska, I.]]
[https://www.uniprot.org/uniprot/DCDA_VIBCH DCDA_VIBCH] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
[[Category: Halavaty, A.]]
== Evolutionary Conservation ==
[[Category: Minasov, G.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Papazisi, L.]]
Check<jmol>
[[Category: Shuvalova, L.]]
  <jmolCheckbox>
[[Category: Winsor, J.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n2/3n2b_consurf.spt"</scriptWhenChecked>
[[Category: Center for structural genomics of infectious disease]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Csgid]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Diaminopimelate decarboxylase]]
  </jmolCheckbox>
[[Category: Lyase]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2b ConSurf].
[[Category: Lysa]]
<div style="clear:both"></div>
[[Category: Structural genomic]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
[[Category: Anderson WF]]
[[Category: Dubrovska I]]
[[Category: Halavaty A]]
[[Category: Minasov G]]
[[Category: Papazisi L]]
[[Category: Shuvalova L]]
[[Category: Winsor J]]
Retrieved from "https://proteopedia.org/3n2b"