3oga: Difference between revisions
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== | ==1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2== | ||
[[http://www.uniprot.org/uniprot/NUDI_SALTY NUDI_SALTY | <StructureSection load='3oga' size='340' side='right'caption='[[3oga]], [[Resolution|resolution]] 1.75Å' scene=''> | ||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3oga]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OGA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OGA FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oga OCA], [https://pdbe.org/3oga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oga RCSB], [https://www.ebi.ac.uk/pdbsum/3oga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oga ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/NUDI_SALTY NUDI_SALTY] Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) (By similarity). | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/3oga_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oga ConSurf]. | |||
<div style="clear:both"></div> | |||
== | ==See Also== | ||
[[ | *[[Nucleoside triphosphatase|Nucleoside triphosphatase]] | ||
[[Category: Salmonella enterica subsp. enterica serovar | *[[Sandbox 30008|Sandbox 30008]] | ||
[[Category: Anderson | __TOC__ | ||
</StructureSection> | |||
[[Category: Dubrovska | [[Category: Large Structures]] | ||
[[Category: Halavaty | [[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]] | ||
[[Category: Minasov | [[Category: Anderson WF]] | ||
[[Category: Peterson | [[Category: Dubrovska I]] | ||
[[Category: Shuvalova | [[Category: Halavaty AS]] | ||
[[Category: Winsor | [[Category: Minasov G]] | ||
[[Category: Peterson S]] | |||
[[Category: Shuvalova L]] | |||
[[Category: Winsor J]] | |||
Latest revision as of 09:38, 6 September 2023
1.75 Angstrom resolution crystal structure of a putative NTP pyrophosphohydrolase (yfaO) from Salmonella typhimurium LT2
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