4mzb: Difference between revisions

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New page: {{STRUCTURE_4mzb| PDB=4mzb | SCENE= }} ===Crystal strucutre of Grx1 from Plasmodium falciparum=== ==About this Structure== 4mzb is a 1 chain structure with sequence from [http://...
 
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{{STRUCTURE_4mzb|  PDB=4mzb  |  SCENE=  }}
===Crystal strucutre of Grx1 from Plasmodium falciparum===


==About this Structure==
==Crystal structure of Grx1 from Plasmodium falciparum==
[[4mzb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4kje 4kje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MZB OCA].  
<StructureSection load='4mzb' size='340' side='right'caption='[[4mzb]], [[Resolution|resolution]] 1.04&Aring;' scene=''>
[[Category: Plasmodium falciparum 3d7]]
== Structural highlights ==
[[Category: Sharma, A.]]
<table><tr><td colspan='2'>[[4mzb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4kje 4kje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MZB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MZB FirstGlance]. <br>
[[Category: Yogavel, M.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.038&#8491;</td></tr>
[[Category: Active site]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene></td></tr>
[[Category: Glutathione]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mzb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mzb OCA], [https://pdbe.org/4mzb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mzb RCSB], [https://www.ebi.ac.uk/pdbsum/4mzb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mzb ProSAT]</span></td></tr>
[[Category: Oxidoreductase]]
</table>
[[Category: Plasticity]]
== Function ==
[[Category: Redox enzyme]]
[https://www.uniprot.org/uniprot/Q9NLB2_PLAF7 Q9NLB2_PLAF7]  
[[Category: Sulfur-sad]]
<div style="background-color:#fffaf0;">
[[Category: Trx fold]]
== Publication Abstract from PubMed ==
Glutaredoxins (Grxs) are redox proteins that use glutathione ((gamma)Glu-Cys-Gly; GSH) as a cofactor. Plasmodium falciparum has one classic dithiol (CXXC) glutaredoxin (glutaredoxin 1; PfGrx1) and three monothiol (CXXS) Grx-like proteins (GLPs), which have five residue insertions prior to the active-site Cys. Here, the crystal structure of PfGrx1 has been determined by the sulfur single-wavelength anomalous diffraction (S-SAD) method utilizing intrinsic protein and solvent S atoms. Several residues were modelled with alternate conformations, and an alternate position was refined for the active-site Cys29 owing to radiation damage. The GSH-binding site is occupied by water polygons and buffer molecules. Structural comparison of PfGrx1 with other Grxs and Grx-like proteins revealed that the GSH-binding motifs (CXXC/CXXS, TVP, CDD, Lys26 and Gln/Arg63) are structurally conserved. Both the monothiol and dithiol Grxs possess three conserved water molecules; two of these were located in the GSH-binding site. PfGrx1 has several polar and charged amino-acid substitutions that provide structurally important additional hydrogen bonds and salt bridges missing in other Grxs.
 
Atomic resolution crystal structure of glutaredoxin 1 from Plasmodium falciparum and comparison with other glutaredoxins.,Yogavel M, Tripathi T, Gupta A, Banday MM, Rahlfs S, Becker K, Belrhali H, Sharma A Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):91-100. doi:, 10.1107/S1399004713025285. Epub 2013 Dec 24. PMID:24419382<ref>PMID:24419382</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4mzb" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Plasmodium falciparum 3D7]]
[[Category: Sharma A]]
[[Category: Yogavel M]]
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