2d2v: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
New page: left|200px<br /><applet load="2d2v" size="350" color="white" frame="true" align="right" spinBox="true" caption="2d2v, resolution 2.5Å" /> '''X-ray structure of th...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2d2v.gif|left|200px]]<br /><applet load="2d2v" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2d2v, resolution 2.5&Aring;" />
'''X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with maltose'''<br />


==About this Structure==
==X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with maltose==
2D2V is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.] with <scene name='pdbligand=MAL:'>MAL</scene> and <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Sucrose-phosphatase Sucrose-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.24 3.1.3.24] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D2V OCA].
<StructureSection load='2d2v' size='340' side='right'caption='[[2d2v]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[2d2v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D2V FirstGlance]. <br>
Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides., Fieulaine S, Lunn JE, Ferrer JL, Proteins. 2007 Aug 15;68(3):796-801. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17510968 17510968]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
[[Category: Single protein]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
[[Category: Sucrose-phosphatase]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d2v OCA], [https://pdbe.org/2d2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d2v RCSB], [https://www.ebi.ac.uk/pdbsum/2d2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d2v ProSAT]</span></td></tr>
[[Category: Synechocystis sp.]]
</table>
[[Category: Ferrer, J.L.]]
== Function ==
[[Category: Fieulaine, S.]]
[https://www.uniprot.org/uniprot/P74325_SYNY3 P74325_SYNY3]
[[Category: Lunn, J.E.]]
== Evolutionary Conservation ==
[[Category: MAL]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: MG]]
Check<jmol>
[[Category: cyanobacteria]]
  <jmolCheckbox>
[[Category: had superfamily]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d2/2d2v_consurf.spt"</scriptWhenChecked>
[[Category: maltose]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: phosphohydrolase]]
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:31:43 2008''
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d2v ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Synechocystis sp. PCC 6803]]
[[Category: Ferrer J-L]]
[[Category: Fieulaine S]]
[[Category: Lunn JE]]
Retrieved from "https://proteopedia.org/2d2v"