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[[Image:2dev.jpg|left|200px]]


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==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==
The line below this paragraph, containing "STRUCTURE_2dev", creates the "Structure Box" on the page.
<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_2dev|  PDB=2dev  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [https://pdbe.org/2dev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [https://www.ebi.ac.uk/pdbsum/2dev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [https://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q72IR6_THET2 Q72IR6_THET2]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DEV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].  
Check<jmol>
[[Category: Single protein]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dev_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dev ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Inagaki, E.]]
[[Category: Inagaki E]]
[[Category: Nakano, N.]]
[[Category: Nakano N]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Shinkai A]]
[[Category: Shinkai, A.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: Cesium ion]]
[[Category: Dodecamer]]
[[Category: Flavin]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 00:17:35 2008''

Latest revision as of 08:26, 25 October 2023

Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions

2dev, resolution 2.45Å

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