2ism: Difference between revisions

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[[Image:2ism.jpg|left|200px]]<br /><applet load="2ism" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2ism, resolution 1.90&Aring;" />
'''Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (TTHA0570) from thermus theromophilus HB8'''<br />


==About this Structure==
==Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (TTHA0570) from thermus theromophilus HB8==
2ISM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ISM OCA].
<StructureSection load='2ism' size='340' side='right'caption='[[2ism]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermus thermophilus]]
<table><tr><td colspan='2'>[[2ism]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ISM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ISM FirstGlance]. <br>
[[Category: Ebihara, A.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
[[Category: Jeyakanthan, J.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
[[Category: Kanaujia, S P.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ism FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ism OCA], [https://pdbe.org/2ism PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ism RCSB], [https://www.ebi.ac.uk/pdbsum/2ism PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ism ProSAT], [https://www.topsan.org/Proteins/RSGI/2ism TOPSAN]</span></td></tr>
[[Category: Kuramitsu, S.]]
</table>
[[Category: Nakagawa, N.]]
== Function ==
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[https://www.uniprot.org/uniprot/Q5SKS3_THET8 Q5SKS3_THET8]  
[[Category: Ranjani, C Vasuki.]]
== Evolutionary Conservation ==
[[Category: Sekar, K.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Shimizu, N.]]
Check<jmol>
[[Category: Shinkai, A.]]
  <jmolCheckbox>
[[Category: Shiro, Y.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/2ism_consurf.spt"</scriptWhenChecked>
[[Category: Yamamoto, M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Yokoyama, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: CA]]
  </jmolCheckbox>
[[Category: CL]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ism ConSurf].
[[Category: bl41xu spring-8]]
<div style="clear:both"></div>
[[Category: bladed beta-propellor]]
__TOC__
[[Category: glucose dehydrogenase]]
</StructureSection>
[[Category: national project on protein structural and functional analyses]]
[[Category: Large Structures]]
[[Category: nppsfa]]
[[Category: Thermus thermophilus HB8]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: Ebihara A]]
[[Category: rsgi]]
[[Category: Jeyakanthan J]]
[[Category: structural genomics]]
[[Category: Kanaujia SP]]
[[Category: sugar binding protein]]
[[Category: Kuramitsu S]]
 
[[Category: Nakagawa N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:55:37 2008''
[[Category: Sekar K]]
[[Category: Shimizu N]]
[[Category: Shinkai A]]
[[Category: Shiro Y]]
[[Category: Vasuki Ranjani C]]
[[Category: Yamamoto M]]
[[Category: Yokoyama S]]

Latest revision as of 08:53, 25 October 2023

Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (TTHA0570) from thermus theromophilus HB8

2ism, resolution 1.90Å

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