2wkk: Difference between revisions

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[[Image:2wkk.png|left|200px]]


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==Identification of the glycan target of the nematotoxic fungal galectin CGL2 in Caenorhabditis elegans==
The line below this paragraph, containing "STRUCTURE_2wkk", creates the "Structure Box" on the page.
<StructureSection load='2wkk' size='340' side='right'caption='[[2wkk]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2wkk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WKK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
{{STRUCTURE_2wkk|  PDB=2wkk  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wkk OCA], [https://pdbe.org/2wkk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wkk RCSB], [https://www.ebi.ac.uk/pdbsum/2wkk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wkk ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CGL2_COPCI CGL2_COPCI] Binds lactose. May play a role in fruiting body formation.<ref>PMID:8999822</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/2wkk_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wkk ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The physiological role of fungal galectins has remained elusive. Here, we show that feeding of a mushroom galectin, Coprinopsis cinerea CGL2, to Caenorhabditis elegans inhibited development and reproduction and ultimately resulted in killing of this nematode. The lack of toxicity of a carbohydrate-binding defective CGL2 variant and the resistance of a C. elegans mutant defective in GDP-fucose biosynthesis suggested that CGL2-mediated nematotoxicity depends on the interaction between the galectin and a fucose-containing glycoconjugate. A screen for CGL2-resistant worm mutants identified this glycoconjugate as a Galbeta1,4Fucalpha1,6 modification of C. elegans N-glycan cores. Analysis of N-glycan structures in wild type and CGL2-resistant nematodes confirmed this finding and allowed the identification of a novel putative glycosyltransferase required for the biosynthesis of this glycoepitope. The X-ray crystal structure of a complex between CGL2 and the Galbeta1,4Fucalpha1,6GlcNAc trisaccharide at 1.5 A resolution revealed the biophysical basis for this interaction. Our results suggest that fungal galectins play a role in the defense of fungi against predators by binding to specific glycoconjugates of these organisms.


===IDENTIFICATION OF THE GLYCAN TARGET OF THE NEMATOTOXIC FUNGAL GALECTIN CGL2 IN CAENORHABDITIS ELEGANS===
Caenorhabditis elegans N-glycan core beta-galactoside confers sensitivity towards nematotoxic fungal galectin CGL2.,Butschi A, Titz A, Walti MA, Olieric V, Paschinger K, Nobauer K, Guo X, Seeberger PH, Wilson IB, Aebi M, Hengartner MO, Kunzler M PLoS Pathog. 2010 Jan;6(1):e1000717. Epub 2010 Jan 8. PMID:20062796<ref>PMID:20062796</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2wkk" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_20062796}}, adds the Publication Abstract to the page
*[[Galectin 3D structures|Galectin 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 20062796 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_20062796}}
__TOC__
 
</StructureSection>
==About this Structure==
[[2wkk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKK OCA].
 
==Reference==
<ref group="xtra">PMID:020062796</ref><references group="xtra"/>
[[Category: Coprinopsis cinerea]]
[[Category: Coprinopsis cinerea]]
[[Category: Aebi, M.]]
[[Category: Large Structures]]
[[Category: Butschi, A.]]
[[Category: Aebi M]]
[[Category: Hengartner, M O.]]
[[Category: Butschi A]]
[[Category: Kuenzler, M.]]
[[Category: Hengartner MO]]
[[Category: Olieric, V.]]
[[Category: Kuenzler M]]
[[Category: Paschinger, K.]]
[[Category: Olieric V]]
[[Category: Seeberger, P H.]]
[[Category: Paschinger K]]
[[Category: Titz, A.]]
[[Category: Seeberger PH]]
[[Category: Waelti, M.]]
[[Category: Titz A]]
[[Category: Wilson, I B.H.]]
[[Category: Waelti M]]
[[Category: Xiaoqiang, G.]]
[[Category: Wilson IBH]]
[[Category: Beta-galactoside binding lectin]]
[[Category: Xiaoqiang G]]
[[Category: Cell wall]]
[[Category: Extracellular matrix]]
[[Category: Fruiting body]]
[[Category: Galectin]]
[[Category: Lectin]]
[[Category: Secreted]]
[[Category: Sugar binding]]
[[Category: Sugar binding protein]]
[[Category: Sugar-binding protein]]
Retrieved from "https://proteopedia.org/2wkk"