2jrm: Difference between revisions
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==Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55== | ==Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55== | ||
<StructureSection load='2jrm' size='340' side='right' caption='[[2jrm | <StructureSection load='2jrm' size='340' side='right'caption='[[2jrm]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2jrm]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2jrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRM FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jrm OCA], [https://pdbe.org/2jrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jrm RCSB], [https://www.ebi.ac.uk/pdbsum/2jrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jrm ProSAT], [https://www.topsan.org/Proteins/NESGC/2jrm TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/Q87PC4_VIBPA Q87PC4_VIBPA] During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes).[HAMAP-Rule:MF_00919] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrm_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jrm_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jrm ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Acton | [[Category: Vibrio parahaemolyticus RIMD 2210633]] | ||
[[Category: Baran | [[Category: Acton TB]] | ||
[[Category: Cunningham | [[Category: Baran MC]] | ||
[[Category: Jiang | [[Category: Cunningham K]] | ||
[[Category: Liu | [[Category: Jiang M]] | ||
[[Category: Ma | [[Category: Liu J]] | ||
[[Category: Montelione | [[Category: Ma L]] | ||
[[Category: Montelione GT]] | |||
[[Category: Owens | [[Category: Owens L]] | ||
[[Category: Rossi | [[Category: Rossi P]] | ||
[[Category: Rost | [[Category: Rost B]] | ||
[[Category: Swapna | [[Category: Swapna G]] | ||
[[Category: Tang | [[Category: Tang Y]] | ||
[[Category: Wang | [[Category: Wang H]] | ||
[[Category: Xiao | [[Category: Xiao R]] | ||
Latest revision as of 10:11, 20 December 2023
Solution NMR structure of ribosome modulation factor VP1593 from Vibrio parahaemolyticus. Northeast Structural Genomics target VpR55
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