2nly: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of protein BH1492 from Bacillus halodurans, Pfam DUF610==
==Crystal structure of protein BH1492 from Bacillus halodurans, Pfam DUF610==
<StructureSection load='2nly' size='340' side='right' caption='[[2nly]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='2nly' size='340' side='right'caption='[[2nly]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2nly]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NLY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NLY FirstGlance]. <br>
<table><tr><td colspan='2'>[[2nly]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NLY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NLY FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BH1492 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86665 Bacillus halodurans])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nly OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nly RCSB], [http://www.ebi.ac.uk/pdbsum/2nly PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nly TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nly OCA], [https://pdbe.org/2nly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nly RCSB], [https://www.ebi.ac.uk/pdbsum/2nly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nly ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nly TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9KCS7_HALH5 Q9KCS7_HALH5]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/2nly_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/2nly_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nly ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus halodurans]]
[[Category: Alkalihalobacillus halodurans]]
[[Category: Burley, S K]]
[[Category: Large Structures]]
[[Category: Jin, X]]
[[Category: Burley SK]]
[[Category: Structural genomic]]
[[Category: Jin X]]
[[Category: Sauder, J M]]
[[Category: Sauder JM]]
[[Category: Shapiro, L]]
[[Category: Shapiro L]]
[[Category: Smith, D]]
[[Category: Smith D]]
[[Category: Wasserman, S]]
[[Category: Wasserman S]]
[[Category: Divergent polysaccharide deacetylase]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: Pfam04748]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]

Latest revision as of 00:08, 28 December 2023

Crystal structure of protein BH1492 from Bacillus halodurans, Pfam DUF610

2nly, resolution 2.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA