1aug: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1aug.png|left|200px]]


<!--
==CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS==
The line below this paragraph, containing "STRUCTURE_1aug", creates the "Structure Box" on the page.
<StructureSection load='1aug' size='340' side='right'caption='[[1aug]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1aug]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AUG FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aug OCA], [https://pdbe.org/1aug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aug RCSB], [https://www.ebi.ac.uk/pdbsum/1aug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aug ProSAT]</span></td></tr>
{{STRUCTURE_1aug|  PDB=1aug  |  SCENE=  }}
</table>
 
== Function ==
===CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS===
[https://www.uniprot.org/uniprot/PCP_BACAM PCP_BACAM] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_10196127}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 10196127 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/au/1aug_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_10196127}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aug ConSurf].
1AUG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AUG OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease., Odagaki Y, Hayashi A, Okada K, Hirotsu K, Kabashima T, Ito K, Yoshimoto T, Tsuru D, Sato M, Clardy J, Structure. 1999 Apr 15;7(4):399-411. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10196127 10196127]
[[Category: Bacillus amyloliquefaciens]]
[[Category: Bacillus amyloliquefaciens]]
[[Category: Pyroglutamyl-peptidase I]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Clardy J]]
[[Category: Clardy, J.]]
[[Category: Hayashi A]]
[[Category: Hayashi, A.]]
[[Category: Hirotsu K]]
[[Category: Hirotsu, K.]]
[[Category: Ito K]]
[[Category: Ito, K.]]
[[Category: Kabashima T]]
[[Category: Kabashima, T.]]
[[Category: Odagaki Y]]
[[Category: Odagaki, Y.]]
[[Category: Okada K]]
[[Category: Okada, K.]]
[[Category: Sato M]]
[[Category: Sato, M.]]
[[Category: Tsuru D]]
[[Category: Tsuru, D.]]
[[Category: Yoshimoto T]]
[[Category: Yoshimoto, T.]]
[[Category: Bacillus amyloliquefacien]]
[[Category: Cysteine proteinase]]
[[Category: Hydrolase]]
[[Category: Pyroglutamyl peptidase]]
[[Category: Thiol protease]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 17:36:51 2008''
Retrieved from "https://proteopedia.org/1aug"