1dgr: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1dgr.png|left|200px]]


<!--
==Refined crystal structure of canavalin from jack bean==
The line below this paragraph, containing "STRUCTURE_1dgr", creates the "Structure Box" on the page.
<StructureSection load='1dgr' size='340' side='right'caption='[[1dgr]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dgr]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DGR FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_1dgr|  PDB=1dgr  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dgr OCA], [https://pdbe.org/1dgr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dgr RCSB], [https://www.ebi.ac.uk/pdbsum/1dgr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dgr ProSAT]</span></td></tr>
 
</table>
===Refined crystal structure of canavalin from jack bean===
== Function ==
 
[https://www.uniprot.org/uniprot/CANA_CANEN CANA_CANEN] Seed storage protein.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_11375502}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 11375502 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/1dgr_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_11375502}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1DGR is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DGR OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dgr ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
X-ray diffraction and atomic force microscopy analysis of twinned crystals: rhombohedral canavalin., Ko TP, Kuznetsov YG, Malkin AJ, Day J, McPherson A, Acta Crystallogr D Biol Crystallogr. 2001 Jun;57(Pt 6):829-39. Epub 2001, May 25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11375502 11375502]
</StructureSection>
[[Category: Canavalia ensiformis]]
[[Category: Canavalia ensiformis]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Ko, T P.]]
[[Category: Ko T-P]]
[[Category: McPherson, A.]]
[[Category: McPherson A]]
[[Category: Duplicated domains beta barrel helical loop]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:03:39 2008''

Latest revision as of 06:53, 7 February 2024

Refined crystal structure of canavalin from jack bean

1dgr, resolution 2.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=1dgr&oldid=4041894"