1dqi: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1dqi.png|left|200px]]


{{STRUCTURE_1dqi|  PDB=1dqi  |  SCENE=  }}
==CRYSTAL STRUCTURE OF SUPEROXIDE REDUCTASE FROM P. FURIOSUS IN THE OXIDIZED STATE AT 1.7 ANGSTROMS RESOLUTION==
 
<StructureSection load='1dqi' size='340' side='right'caption='[[1dqi]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
===CRYSTAL STRUCTURE OF SUPEROXIDE REDUCTASE FROM P. FURIOSUS IN THE OXIDIZED STATE AT 1.7 ANGSTROMS RESOLUTION===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[1dqi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DQI FirstGlance]. <br>
{{ABSTRACT_PUBMED_10704199}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dqi OCA], [https://pdbe.org/1dqi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dqi RCSB], [https://www.ebi.ac.uk/pdbsum/1dqi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dqi ProSAT]</span></td></tr>
[[1dqi]] is a 4 chain structure of [[Superoxide Reductase]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQI OCA].  
</table>
== Function ==
[https://www.uniprot.org/uniprot/SOR_PYRFU SOR_PYRFU] Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/1dqi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dqi ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Superoxide Reductase|Superoxide Reductase]]
*[[Superoxide Reductase|Superoxide Reductase]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:010704199</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
[[Category: Adams, M W.W.]]
[[Category: Adams MWW]]
[[Category: Hu, Y.]]
[[Category: Hu Y]]
[[Category: Jenney, F E.]]
[[Category: Jenney Jr FE]]
[[Category: Rees, D C.]]
[[Category: Rees DC]]
[[Category: Yeh, A P.]]
[[Category: Yeh AP]]
[[Category: Non-heme iron protein]]
[[Category: Oxidoreductase]]
Retrieved from "https://proteopedia.org/1dqi"