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[[Image:1fkl.png|left|200px]]


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==ATOMIC STRUCTURE OF FKBP12-RAPAYMYCIN, AN IMMUNOPHILIN-IMMUNOSUPPRESSANT COMPLEX==
The line below this paragraph, containing "STRUCTURE_1fkl", creates the "Structure Box" on the page.
<StructureSection load='1fkl' size='340' side='right'caption='[[1fkl]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1fkl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FKL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RAP:RAPAMYCIN+IMMUNOSUPPRESSANT+DRUG'>RAP</scene></td></tr>
{{STRUCTURE_1fkl|  PDB=1fkl  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fkl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fkl OCA], [https://pdbe.org/1fkl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fkl RCSB], [https://www.ebi.ac.uk/pdbsum/1fkl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fkl ProSAT]</span></td></tr>
 
</table>
===ATOMIC STRUCTURE OF FKBP12-RAPAYMYCIN, AN IMMUNOPHILIN-IMMUNOSUPPRESSANT COMPLEX===
== Function ==
 
[https://www.uniprot.org/uniprot/FKB1A_BOVIN FKB1A_BOVIN] Keeps in an inactive conformation TGFBR1, the TGF-beta type I serine/threonine kinase receptor, preventing TGF-beta receptor activation in absence of ligand. May modulate the RYR1 calcium channel activity. PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15299838 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/1fkl_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15299838}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[1fkl]] is a 1 chain structure of [[Cyclophilin]] with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FKL OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fkl ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Cyclophilin]]
*[[FKBP 3D structures|FKBP 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:15299838</ref><references group="xtra"/>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Peptidylprolyl isomerase]]
[[Category: Large Structures]]
[[Category: Navia, M A.]]
[[Category: Navia MA]]
[[Category: Sintchak, M D.]]
[[Category: Sintchak MD]]
[[Category: Thomson, J A.]]
[[Category: Thomson JA]]
[[Category: Wilson, K P.]]
[[Category: Wilson KP]]
[[Category: Cis-trans prolyl-isomerase]]
[[Category: Fk506 binding protein]]
[[Category: Fkbp]]
[[Category: Fkbp12]]
[[Category: Rotamase]]

Latest revision as of 07:15, 7 February 2024

ATOMIC STRUCTURE OF FKBP12-RAPAYMYCIN, AN IMMUNOPHILIN-IMMUNOSUPPRESSANT COMPLEX

1fkl, resolution 1.70Å

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