311d: Difference between revisions

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{{Seed}}
[[Image:311d.png|left|200px]]


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==THE ROLE OF HYDROGEN BONDING IN MINOR-GROOVE DRUG-DNA RECOGNITION. STRUCTURE OF A BIS-AMIDINIUM DERIVATIVE OF HOECHST 33258 COMPLEXED TO THE DODECANUCLEOTIDE D(CGCGAATTCGCG)2==
The line below this paragraph, containing "STRUCTURE_311d", creates the "Structure Box" on the page.
<StructureSection load='311d' size='340' side='right'caption='[[311d]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[311d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=311D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=311D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HT2:5-AMIDINO-2-[2-(4-AMIDINOPHENYL)-5-BENZIMIDAZOLYL]BENZIMIDAZOLE'>HT2</scene></td></tr>
{{STRUCTURE_311d|  PDB=311d  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=311d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=311d OCA], [https://pdbe.org/311d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=311d RCSB], [https://www.ebi.ac.uk/pdbsum/311d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=311d ProSAT]</span></td></tr>
 
</table>
===THE ROLE OF HYDROGEN BONDING IN MINOR-GROOVE DRUG-DNA RECOGNITION. STRUCTURE OF A BIS-AMIDINIUM DERIVATIVE OF HOECHST 33258 COMPLEXED TO THE DODECANUCLEOTIDE D(CGCGAATTCGCG)2===
__TOC__
 
</StructureSection>
 
[[Category: Large Structures]]
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[[Category: Boykin DW]]
The line below this paragraph, {{ABSTRACT_PUBMED_9162901}}, adds the Publication Abstract to the page
[[Category: Clark GR]]
(as it appears on PubMed at http://www.pubmed.gov), where 9162901 is the PubMed ID number.
[[Category: Czarny A]]
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[[Category: Neidle S]]
{{ABSTRACT_PUBMED_9162901}}
 
==About this Structure==
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=311D OCA].  
 
==Reference==
Structure of a bis-amidinium derivative of hoechst 33258 complexed to dodecanucleotide d(CGCGAATTCGCG)2: the role of hydrogen bonding in minor groove drug-DNA recognition., Clark GR, Boykin DW, Czarny A, Neidle S, Nucleic Acids Res. 1997 Apr 15;25(8):1510-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9162901 9162901]
[[Category: Boykin, D W.]]
[[Category: Clark, G R.]]
[[Category: Czarny, A.]]
[[Category: Neidle, S.]]
[[Category: B-dna]]
[[Category: Complexed with drug]]
[[Category: Double helix]]
 
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