1ydf: Difference between revisions

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[[Image:1ydf.gif|left|200px]]


{{Structure
==Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae==
|PDB= 1ydf |SIZE=350|CAPTION= <scene name='initialview01'>1ydf</scene>, resolution 2.60&Aring;
<StructureSection load='1ydf' size='340' side='right'caption='[[1ydf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
<table><tr><td colspan='2'>[[1ydf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDF FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0647 NagD]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydf OCA], [https://pdbe.org/1ydf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydf RCSB], [https://www.ebi.ac.uk/pdbsum/1ydf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydf TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ydf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydf OCA], [http://www.ebi.ac.uk/pdbsum/1ydf PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1ydf RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/A0A0H2UQJ9_STRPN A0A0H2UQJ9_STRPN]
'''Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
1YDF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydf_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Streptococcus pneumoniae tigr4]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Burley, S K.]]
  </jmolCheckbox>
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydf ConSurf].
[[Category: Seetharaman, J.]]
<div style="clear:both"></div>
[[Category: Swaminathan, S.]]
__TOC__
[[Category: hydrolase haloacid dehalogenase-like family]]
</StructureSection>
[[Category: hypothetical protein]]
[[Category: Large Structures]]
[[Category: new york structural genomix research consortium]]
[[Category: Streptococcus pneumoniae TIGR4]]
[[Category: nysgxrc]]
[[Category: Burley SK]]
[[Category: protein structure initiative]]
[[Category: Seetharaman J]]
[[Category: psi]]
[[Category: Swaminathan S]]
[[Category: structural genomic]]
 
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Retrieved from "https://proteopedia.org/1ydf"