1zcc: Difference between revisions

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New page: left|200px<br /><applet load="1zcc" size="450" color="white" frame="true" align="right" spinBox="true" caption="1zcc, resolution 2.50Å" /> '''Crystal structure of...
 
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[[Image:1zcc.gif|left|200px]]<br /><applet load="1zcc" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1zcc, resolution 2.50&Aring;" />
'''Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58'''<br />


==About this Structure==
==Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58==
1ZCC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens] with ACT and SO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ZCC OCA].  
<StructureSection load='1zcc' size='340' side='right'caption='[[1zcc]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1zcc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZCC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZCC FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zcc OCA], [https://pdbe.org/1zcc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zcc RCSB], [https://www.ebi.ac.uk/pdbsum/1zcc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zcc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zcc TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A9CG82_AGRFC A9CG82_AGRFC]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zc/1zcc_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zcc ConSurf].
<div style="clear:both"></div>


==Reference==
==See Also==
Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit., Rao KN, Bonanno JB, Burley SK, Swaminathan S, Proteins. 2006 Nov 1;65(2):514-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16909422 16909422]
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
[[Category: Agrobacterium tumefaciens]]
__TOC__
[[Category: Single protein]]
</StructureSection>
[[Category: Burley, S.K.]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Krishnamurthy, N.R.]]
[[Category: Large Structures]]
[[Category: Kumaran, D.]]
[[Category: Burley SK]]
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[[Category: Krishnamurthy NR]]
[[Category: Swaminathan, S.]]
[[Category: Kumaran D]]
[[Category: ACT]]
[[Category: Swaminathan S]]
[[Category: SO4]]
[[Category: agrobacterium tumefaciens str. c58]]
[[Category: glycerophosphodiester phosphodiesterase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
[[Category: t2047]]
 
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