2gu3: Difference between revisions

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[[Image:2gu3.gif|left|200px]]


{{Structure
==YpmB protein from Bacillus subtilis==
|PDB= 2gu3 |SIZE=350|CAPTION= <scene name='initialview01'>2gu3</scene>, resolution 1.74&Aring;
<StructureSection load='2gu3' size='340' side='right'caption='[[2gu3]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>
<table><tr><td colspan='2'>[[2gu3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GU3 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
|GENE= ypmB, BSU22380 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5353 COG5353]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gu3 OCA], [https://pdbe.org/2gu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gu3 RCSB], [https://www.ebi.ac.uk/pdbsum/2gu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gu3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2gu3 TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gu3 OCA], [http://www.ebi.ac.uk/pdbsum/2gu3 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2gu3 RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/YPMB_BACSU YPMB_BACSU]
'''YpmB protein from Bacillus subtilis'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2GU3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GU3 OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/2gu3_consurf.spt"</scriptWhenChecked>
[[Category: Bacillus subtilis]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Dementieva, I.]]
  </jmolCheckbox>
[[Category: Joachimiak, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gu3 ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Maltseva, N.]]
__TOC__
[[Category: Moy, S.]]
</StructureSection>
[[Category: Osipiuk, J.]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: apc1927]]
[[Category: Large Structures]]
[[Category: mcsg]]
[[Category: Dementieva I]]
[[Category: midwest center for structural genomic]]
[[Category: Joachimiak A]]
[[Category: protein structure initiative]]
[[Category: Maltseva N]]
[[Category: psi]]
[[Category: Moy S]]
[[Category: structural genomic]]
[[Category: Osipiuk J]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:27:40 2008''

Latest revision as of 09:29, 14 February 2024

YpmB protein from Bacillus subtilis

2gu3, resolution 1.74Å

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