3clj: Difference between revisions

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{{Seed}}
[[Image:3clj.png|left|200px]]


<!--
==Structure of the RNA polymerase II CTD-interacting domain of Nrd1==
The line below this paragraph, containing "STRUCTURE_3clj", creates the "Structure Box" on the page.
<StructureSection load='3clj' size='340' side='right'caption='[[3clj]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3clj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CLJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3clj|  PDB=3clj  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3clj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clj OCA], [https://pdbe.org/3clj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3clj RCSB], [https://www.ebi.ac.uk/pdbsum/3clj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3clj ProSAT]</span></td></tr>
 
</table>
===Structure of the RNA polymerase II CTD-interacting domain of Nrd1===
== Function ==
 
[https://www.uniprot.org/uniprot/NRD1_YEAST NRD1_YEAST] Plays a role in sequence-specific regulation of nuclear pre-mRNA abundance.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18660819}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18660819 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3clj_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18660819}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3CLJ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLJ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3clj ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:18660819</ref><references group="xtra"/>
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Buratowski, S.]]
[[Category: Buratowski S]]
[[Category: Kim, M.]]
[[Category: Kim M]]
[[Category: Meinhart, A.]]
[[Category: Meinhart A]]
[[Category: Mutschler, H.]]
[[Category: Mutschler H]]
[[Category: Vasiljeva, L.]]
[[Category: Vasiljeva L]]
[[Category: Ctd-interacting domain]]
[[Category: Nucleus]]
[[Category: Phosphoprotein]]
[[Category: Rna binding protein]]
[[Category: Rna polymerase ii binding protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:36:26 2010''

Latest revision as of 09:36, 21 February 2024

Structure of the RNA polymerase II CTD-interacting domain of Nrd1

3clj, resolution 2.10Å

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