3cpm: Difference between revisions

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{{Seed}}
[[Image:3cpm.jpg|left|200px]]


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==plant peptide deformylase PDF1B crystal structure==
The line below this paragraph, containing "STRUCTURE_3cpm", creates the "Structure Box" on the page.
<StructureSection load='3cpm' size='340' side='right'caption='[[3cpm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cpm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CPM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CPM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3cpm|  PDB=3cpm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cpm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cpm OCA], [https://pdbe.org/3cpm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cpm RCSB], [https://www.ebi.ac.uk/pdbsum/3cpm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cpm ProSAT]</span></td></tr>
 
</table>
===plant peptide deformylase PDF1B crystal structure===
== Function ==
 
[https://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18412546}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18412546 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/3cpm_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18412546}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3CPM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CPM OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cpm ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture., Dirk LM, Schmidt JJ, Cai Y, Barnes JC, Hanger KM, Nayak NR, Williams MA, Grossman RB, Houtz RL, Rodgers DW, Biochem J. 2008 Aug 1;413(3):417-27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18412546 18412546]
<references/>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Peptide deformylase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Cai Y]]
[[Category: Cai, Y.]]
[[Category: Dirk LMA]]
[[Category: Dirk, L M.A.]]
[[Category: Houtz RL]]
[[Category: Houtz, R L.]]
[[Category: Rodgers DW]]
[[Category: Rodgers, D W.]]
[[Category: Schmidt JJ]]
[[Category: Schmidt, J J.]]
[[Category: Alpha beta]]
[[Category: Chloroplast]]
[[Category: Hydrolase]]
[[Category: Iron]]
[[Category: Metal-binding]]
[[Category: Plastid]]
[[Category: Protein biosynthesis]]
[[Category: Transit peptide]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 11:48:35 2008''

Latest revision as of 09:37, 21 February 2024

plant peptide deformylase PDF1B crystal structure

3cpm, resolution 2.40Å

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