3e8k: Difference between revisions

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{{Seed}}
[[Image:3e8k.png|left|200px]]


<!--
==Crystal structure of HK97 Prohead II==
The line below this paragraph, containing "STRUCTURE_3e8k", creates the "Structure Box" on the page.
<SX load='3e8k' size='340' side='right' viewer='molstar' caption='[[3e8k]], [[Resolution|resolution]] 3.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3e8k]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E8K FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.65&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e8k OCA], [https://pdbe.org/3e8k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e8k RCSB], [https://www.ebi.ac.uk/pdbsum/3e8k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e8k ProSAT]</span></td></tr>
{{STRUCTURE_3e8k|  PDB=3e8k  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of HK97 Prohead II===
[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_19204733}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 19204733 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/3e8k_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_19204733}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e8k ConSurf].
3E8K is a 7 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8K OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:19204733</ref><references group="xtra"/>
__TOC__
[[Category: Enterobacteria phage hk97]]
</SX>
[[Category: Gertsman, I.]]
[[Category: Escherichia virus HK97]]
[[Category: Johnson, J E.]]
[[Category: Large Structures]]
[[Category: Speir, J.]]
[[Category: Gertsman I]]
[[Category: Capsid protein]]
[[Category: Johnson JE]]
[[Category: Hk97 capsid fold]]
[[Category: Speir J]]
[[Category: Virion]]
[[Category: Virus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  8 20:10:28 2009''
Retrieved from "https://proteopedia.org/3e8k"