3eq4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(17 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3eq4.jpg|left|200px]]


<!--
==Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM==
The line below this paragraph, containing "STRUCTURE_3eq4", creates the "Structure Box" on the page.
<SX load='3eq4' size='340' side='right' viewer='molstar' caption='[[3eq4]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3eq4]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EQ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EQ4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eq4 OCA], [https://pdbe.org/3eq4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eq4 RCSB], [https://www.ebi.ac.uk/pdbsum/3eq4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eq4 ProSAT]</span></td></tr>
{{STRUCTURE_3eq4| PDB=3eq4 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RL11_ECOLI RL11_ECOLI] This protein binds directly to 23S ribosomal RNA. Forms the L11 stalk, which is mobile in the ribosome, indicating its contribution to the activity of initiation, elongation and release factors.[HAMAP-Rule:MF_00736_B]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/3eq4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eq4 ConSurf].
<div style="clear:both"></div>


===Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM===
==See Also==
 
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
 
*[[Ribosomal protein L11 3D structures|Ribosomal protein L11 3D structures]]
<!--
*[[Ribosomal protein S12|Ribosomal protein S12]]
The line below this paragraph, {{ABSTRACT_PUBMED_19020518}}, adds the Publication Abstract to the page
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
(as it appears on PubMed at http://www.pubmed.gov), where 19020518 is the PubMed ID number.
__TOC__
-->
</SX>
{{ABSTRACT_PUBMED_19020518}}
[[Category: Escherichia coli K-12]]
 
[[Category: Large Structures]]
==About this Structure==
[[Category: Agirrezabala X]]
3EQ4 is a 9 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EQ4 OCA].
[[Category: Frank J]]
 
[[Category: Li W]]
==Reference==
Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM., Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J, EMBO J. 2008 Nov 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19020518 19020518]
[[Category: Escherichia coli k12]]
[[Category: Agirrezabala, X.]]
[[Category: Frank, J.]]
[[Category: Li, W.]]
[[Category: A/t-trna]]
[[Category: Acetylation]]
[[Category: Antibiotic resistance]]
[[Category: Automated data collection]]
[[Category: Cytoplasm]]
[[Category: Elongation factor]]
[[Category: Gtp-binding]]
[[Category: Membrane]]
[[Category: Methylation]]
[[Category: Nucleotide-binding]]
[[Category: Phosphoprotein]]
[[Category: Protein biosynthesis]]
[[Category: Protein translation]]
[[Category: Ribonucleoprotein]]
[[Category: Ribosomal protein]]
[[Category: Ribosomal protein/rna complex]]
[[Category: Rna-binding]]
[[Category: Rrna-binding]]
[[Category: Ternary complex]]
[[Category: Trna-binding]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 17 13:46:33 2008''

Latest revision as of 09:49, 21 February 2024

Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM

Loading...

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3eq4&oldid=4064659"