3fo8: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3fo8.png|left|200px]]


<!--
==Crystal structure of the bacteriophage T4 tail sheath protein, protease resistant fragment gp18PR==
The line below this paragraph, containing "STRUCTURE_3fo8", creates the "Structure Box" on the page.
<StructureSection load='3fo8' size='340' side='right'caption='[[3fo8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3fo8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FO8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
{{STRUCTURE_3fo8|  PDB=3fo8  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fo8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fo8 OCA], [https://pdbe.org/3fo8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fo8 RCSB], [https://www.ebi.ac.uk/pdbsum/3fo8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fo8 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the bacteriophage T4 tail sheath protein, protease resistant fragment gp18PR===
== Function ==
 
[https://www.uniprot.org/uniprot/TSP_BPT4 TSP_BPT4] Structural component of the bacteriophage tail which consists of a contractile sheath, a tube and a baseplate. The central cylindrical segment of the tail consists of a rigid tube, composed of multiple copies of gp19, surrounded by the outer contractile sheath assembled from gp18 subunits. A total of 138 copies of gp18 arranged into 23 hexameric rings constitutes the sheath. During infection, contraction of the sheath drives the central tube through the host outer membrane, creating a channel for DNA ejection from the capsid into the host cell.<ref>PMID:14625682</ref>
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19229296}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19229296 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fo/3fo8_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19229296}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3FO8 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FO8 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fo8 ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:19229296</ref><references group="xtra"/>
<references/>
[[Category: Enterobacteria phage t4]]
__TOC__
[[Category: Aksyuk, A A.]]
</StructureSection>
[[Category: Kostyuchenko, V A.]]
[[Category: Escherichia virus T4]]
[[Category: Kurochkina, L P.]]
[[Category: Large Structures]]
[[Category: Leiman, P G.]]
[[Category: Aksyuk AA]]
[[Category: Mesyanzhinov, V V.]]
[[Category: Kostyuchenko VA]]
[[Category: Rossmann, M G.]]
[[Category: Kurochkina LP]]
[[Category: Shneider, M M.]]
[[Category: Leiman PG]]
[[Category: Bacteriophage t4]]
[[Category: Mesyanzhinov VV]]
[[Category: Mostly beta]]
[[Category: Rossmann MG]]
[[Category: Tail sheath]]
[[Category: Shneider MM]]
[[Category: Viral protein]]
[[Category: Viral structural protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 10:42:04 2009''
Retrieved from "https://proteopedia.org/3fo8"