3i4j: Difference between revisions

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==Crystal structure of Aminotransferase, class III from Deinococcus radiodurans==
==Crystal structure of Aminotransferase, class III from Deinococcus radiodurans==
<StructureSection load='3i4j' size='340' side='right' caption='[[3i4j]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='3i4j' size='340' side='right'caption='[[3i4j]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3i4j]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I4J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I4J FirstGlance]. <br>
<table><tr><td colspan='2'>[[3i4j]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I4J FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DR_A0121 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 Deinococcus radiodurans])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i4j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i4j RCSB], [http://www.ebi.ac.uk/pdbsum/3i4j PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i4j OCA], [https://pdbe.org/3i4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i4j RCSB], [https://www.ebi.ac.uk/pdbsum/3i4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i4j ProSAT]</span></td></tr>
<table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9RZ32_DEIRA Q9RZ32_DEIRA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/3i4j_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/3i4j_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i4j ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
[[Category: Almo, S C.]]
[[Category: Large Structures]]
[[Category: Burley, S K.]]
[[Category: Almo SC]]
[[Category: Fedorov, A A.]]
[[Category: Burley SK]]
[[Category: Fedorov, E V.]]
[[Category: Fedorov AA]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Fedorov EV]]
[[Category: Sauder, J M.]]
[[Category: Sauder JM]]
[[Category: Toro, R.]]
[[Category: Toro R]]
[[Category: Aminotransferase]]
[[Category: Class iii]]
[[Category: Deinococcus radioduran]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Pyridoxal phosphate]]
[[Category: Structural genomic]]
[[Category: Target 11246c]]
[[Category: Transferase]]

Latest revision as of 10:03, 21 February 2024

Crystal structure of Aminotransferase, class III from Deinococcus radiodurans

3i4j, resolution 1.70Å

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