2agk: Difference between revisions

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{{Seed}}
[[Image:2agk.png|left|200px]]


<!--
==Structure of S. cerevisiae His6 protein==
The line below this paragraph, containing "STRUCTURE_2agk", creates the "Structure Box" on the page.
<StructureSection load='2agk' size='340' side='right'caption='[[2agk]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2agk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AGK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
{{STRUCTURE_2agk|  PDB=2agk  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2agk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2agk OCA], [https://pdbe.org/2agk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2agk RCSB], [https://www.ebi.ac.uk/pdbsum/2agk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2agk ProSAT]</span></td></tr>
 
</table>
===Structure of S. cerevisiae His6 protein===
== Function ==
 
[https://www.uniprot.org/uniprot/HIS4_YEAST HIS4_YEAST] Catalyzes the isomerization of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_16731983}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 16731983 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ag/2agk_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_16731983}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2AGK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AGK OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2agk ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Crystal structure of the yeast His6 enzyme suggests a reaction mechanism., Quevillon-Cheruel S, Leulliot N, Graille M, Blondeau K, Janin J, van Tilbeurgh H, Protein Sci. 2006 Jun;15(6):1516-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16731983 16731983]
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Tilbeurgh HV]]
[[Category: Tilbeurgh, H V.]]
[[Category: YSG, Paris-Sud Yeast Structural Genomics.]]
[[Category: Paris-sud yeast structural genomic]]
[[Category: S. cerevisiae structural genomics project]]
[[Category: Structural genomic]]
[[Category: Tim alpha/beta barrel]]
[[Category: Ysg]]
 
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Retrieved from "https://proteopedia.org/2agk"