2d5a: Difference between revisions

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{{Seed}}
[[Image:2d5a.png|left|200px]]


<!--
==hypothetical protein from Pyrococcus horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_2d5a", creates the "Structure Box" on the page.
<StructureSection load='2d5a' size='340' side='right'caption='[[2d5a]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2d5a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5A FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
{{STRUCTURE_2d5a|  PDB=2d5a  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5a OCA], [https://pdbe.org/2d5a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5a RCSB], [https://www.ebi.ac.uk/pdbsum/2d5a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5a ProSAT], [https://www.topsan.org/Proteins/RSGI/2d5a TOPSAN]</span></td></tr>
 
</table>
===hypothetical protein from Pyrococcus horikoshii OT3===
== Function ==
 
[https://www.uniprot.org/uniprot/O58836_PYRHO O58836_PYRHO]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_17342453}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 17342453 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5a_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17342453}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2D5A is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5A OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5a ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins., Hiyama TB, Zhao M, Kitago Y, Yao M, Sekine S, Terada T, Kuroishi C, Liu ZJ, Rose JP, Kuramitsu S, Shirouzu M, Watanabe N, Yokoyama S, Tanaka I, Wang BC, J Struct Funct Genomics. 2006 Dec;7(3-4):119-29. Epub 2007 Mar 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17342453 17342453]
</StructureSection>
[[Category: Pyrococcus horikoshii ot3]]
[[Category: Large Structures]]
[[Category: Hiyama, T B.]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Hiyama TB]]
[[Category: Sekine, S.]]
[[Category: Sekine S]]
[[Category: Yokoyama, S.]]
[[Category: Yokoyama S]]
[[Category: Coa binding]]
[[Category: Hypothetical protein]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 27 13:47:34 2008''

Latest revision as of 13:46, 13 March 2024

hypothetical protein from Pyrococcus horikoshii OT3

2d5a, resolution 1.70Å

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