2d5l: Difference between revisions

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[[Image:2d5l.png|left|200px]]


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==Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis==
The line below this paragraph, containing "STRUCTURE_2d5l", creates the "Structure Box" on the page.
<StructureSection load='2d5l' size='340' side='right'caption='[[2d5l]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2d5l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5L FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2d5l|  PDB=2d5l  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5l OCA], [https://pdbe.org/2d5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5l RCSB], [https://www.ebi.ac.uk/pdbsum/2d5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5l ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis===
== Function ==
 
[https://www.uniprot.org/uniprot/PTP_PORGI PTP_PORGI] Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position.<ref>PMID:10092598</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 16914159 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5l_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_16914159}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[2d5l]] is a 1 chain structure of [[Tripeptidyl peptidase]] with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5L OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5l ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Tripeptidyl peptidase]]
*[[Tripeptidyl peptidase|Tripeptidyl peptidase]]
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:16914159</ref><references group="xtra"/>
__TOC__
[[Category: Porphyromonas gingivalis w83]]
</StructureSection>
[[Category: Ito, K.]]
[[Category: Large Structures]]
[[Category: Nakajima, Y.]]
[[Category: Porphyromonas gingivalis W83]]
[[Category: Onohara, Y.]]
[[Category: Ito K]]
[[Category: Xu, Y.]]
[[Category: Nakajima Y]]
[[Category: Yamada, N.]]
[[Category: Onohara Y]]
[[Category: Yoshimoto, T.]]
[[Category: Xu Y]]
[[Category: Hydrolase]]
[[Category: Yamada N]]
[[Category: Peptidase family s9]]
[[Category: Yoshimoto T]]
[[Category: Prolyl oligopeptidase family]]
[[Category: Serine peptidase]]
Retrieved from "https://proteopedia.org/2d5l"