2dt4: Difference between revisions

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[[Image:2dt4.jpg|left|200px]]


<!--
==Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution==
The line below this paragraph, containing "STRUCTURE_2dt4", creates the "Structure Box" on the page.
<StructureSection load='2dt4' size='340' side='right'caption='[[2dt4]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dt4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DT4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_2dt4|  PDB=2dt4  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dt4 OCA], [https://pdbe.org/2dt4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dt4 RCSB], [https://www.ebi.ac.uk/pdbsum/2dt4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dt4 ProSAT]</span></td></tr>
 
</table>
'''Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/O58532_PYRHO O58532_PYRHO]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DT4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DT4 OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dt/2dt4_consurf.spt"</scriptWhenChecked>
Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 A resolution., Lin L, Nakano H, Nakamura S, Uchiyama S, Fujimoto S, Matsunaga S, Kobayashi Y, Ohkubo T, Fukui K, Proteins. 2007 May 1;67(2):505-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17295322 17295322]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dt4 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
[[Category: Single protein]]
[[Category: Fujimoto S]]
[[Category: Fujimoto, S.]]
[[Category: Lin L]]
[[Category: Lin, L.]]
[[Category: Matsunaga S]]
[[Category: Matsunaga, S.]]
[[Category: Nakamura S]]
[[Category: Nakamura, S.]]
[[Category: Nakano H]]
[[Category: Nakano, H.]]
[[Category: Uchiyama S]]
[[Category: Uchiyama, S.]]
[[Category: Ppc domain]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 01:16:20 2008''

Latest revision as of 13:48, 13 March 2024

Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution

2dt4, resolution 1.60Å

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