4e9m: Difference between revisions

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[[Image:4e9m.jpg|left|200px]]


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==NOD1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit==
The line below this paragraph, containing "STRUCTURE_4e9m", creates the "Structure Box" on the page.
<StructureSection load='4e9m' size='340' side='right'caption='[[4e9m]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[4e9m]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E9M FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene></td></tr>
{{STRUCTURE_4e9m|  PDB=4e9m  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e9m OCA], [https://pdbe.org/4e9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e9m RCSB], [https://www.ebi.ac.uk/pdbsum/4e9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e9m ProSAT]</span></td></tr>
 
</table>
===NOD1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit===
== Function ==
 
[https://www.uniprot.org/uniprot/NOD1_HUMAN NOD1_HUMAN] Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS). Forms an intracellular sensing system along with ARHGEF2 for the detection of microbial effectors during cell invasion by pathogens. Required for RHOA and RIPK2 dependent NF-kappa-B signaling pathway activation upon S.flexneri cell invasion. Involved not only in sensing peptidoglycan (PGN)-derived muropeptides but also in the activation of NF-kappa-B by Shigella effector proteins IpgB2 and OspB. Recruits NLRP10 to the cell membrane following bacterial infection.<ref>PMID:11058605</ref> <ref>PMID:19043560</ref> <ref>PMID:22672233</ref> <ref>PMID:17054981</ref>
 
== References ==
==About this Structure==
<references/>
[[4e9m]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9M OCA].  
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Berry, E A.]]
[[Category: Large Structures]]
[[Category: Huang, L S.]]
[[Category: Berry EA]]
[[Category: Walker-Kopf, N.]]
[[Category: Huang LS]]
[[Category: Innate immunity]]
[[Category: Walker-Kopp N]]
[[Category: Protein binding]]
[[Category: Ripk2]]
Retrieved from "https://proteopedia.org/4e9m"