3dbn: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3dbn.png|left|200px]]


<!--
==Crystal structure of the Streptoccocus suis serotype2 D-mannonate dehydratase in complex with its substrate==
The line below this paragraph, containing "STRUCTURE_3dbn", creates the "Structure Box" on the page.
<StructureSection load='3dbn' size='340' side='right'caption='[[3dbn]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dbn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis_05ZYH33 Streptococcus suis 05ZYH33]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DBN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS2:D-MANNONIC+ACID'>CS2</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
{{STRUCTURE_3dbn|  PDB=3dbn  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dbn OCA], [https://pdbe.org/3dbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dbn RCSB], [https://www.ebi.ac.uk/pdbsum/3dbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dbn ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the Streptoccocus suis serotype2 D-mannonate dehydratase in complex with its substrate===
== Function ==
 
[https://www.uniprot.org/uniprot/UXUA_STRSY UXUA_STRSY] Catalyzes the dehydration of D-mannonate (By similarity).
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19617363}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19617363 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dbn_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19617363}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3DBN is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBN OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dbn ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:19617363</ref><references group="xtra"/>
</StructureSection>
[[Category: Mannonate dehydratase]]
[[Category: Large Structures]]
[[Category: Streptococcus suis]]
[[Category: Streptococcus suis 05ZYH33]]
[[Category: Gao, F.]]
[[Category: Gao F]]
[[Category: Gao, G F.]]
[[Category: Gao GF]]
[[Category: Peng, H.]]
[[Category: Peng H]]
[[Category: Zhang, Q.]]
[[Category: Zhang Q]]
[[Category: Lyase]]
[[Category: Tim barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep  3 16:01:34 2009''

Latest revision as of 08:23, 20 March 2024

Crystal structure of the Streptoccocus suis serotype2 D-mannonate dehydratase in complex with its substrate

3dbn, resolution 2.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3dbn&oldid=4103536"