2b1w: Difference between revisions

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[[Image:2b1w.gif|left|200px]]


<!--
==Solution structure of the NOD1 Caspase Activating and Recruitment Domain==
The line below this paragraph, containing "STRUCTURE_2b1w", creates the "Structure Box" on the page.
<StructureSection load='2b1w' size='340' side='right'caption='[[2b1w]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2b1w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B1W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B1W FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b1w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b1w OCA], [https://pdbe.org/2b1w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b1w RCSB], [https://www.ebi.ac.uk/pdbsum/2b1w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b1w ProSAT]</span></td></tr>
{{STRUCTURE_2b1w|  PDB=2b1w  |  SCENE= }}
</table>
 
== Function ==
'''Solution structure of the NOD1 Caspase Activating and Recruitment Domain'''
[https://www.uniprot.org/uniprot/NOD1_HUMAN NOD1_HUMAN] Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS). Forms an intracellular sensing system along with ARHGEF2 for the detection of microbial effectors during cell invasion by pathogens. Required for RHOA and RIPK2 dependent NF-kappa-B signaling pathway activation upon S.flexneri cell invasion. Involved not only in sensing peptidoglycan (PGN)-derived muropeptides but also in the activation of NF-kappa-B by Shigella effector proteins IpgB2 and OspB. Recruits NLRP10 to the cell membrane following bacterial infection.<ref>PMID:11058605</ref> <ref>PMID:19043560</ref> <ref>PMID:22672233</ref> <ref>PMID:17054981</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2B1W is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B1W OCA].  
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b1/2b1w_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b1w ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Cusack, S.]]
[[Category: Cusack S]]
[[Category: Favier, A.]]
[[Category: Favier A]]
[[Category: Manon, F.]]
[[Category: Manon F]]
[[Category: Simorre, J P.]]
[[Category: Simorre JP]]
[[Category: Card4]]
[[Category: Caspase recruitment domain]]
[[Category: Greek key]]
[[Category: Inflammation]]
[[Category: Nf-kb]]
[[Category: Six-helix bundle]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 19:44:54 2008''
Retrieved from "https://proteopedia.org/2b1w"