2f40: Difference between revisions

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==Structure of a Novel Protein from Backbone-Centered NMR Data and NMR-Assisted Structure Prediction==
==Structure of a Novel Protein from Backbone-Centered NMR Data and NMR-Assisted Structure Prediction==
<StructureSection load='2f40' size='340' side='right' caption='[[2f40]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
<StructureSection load='2f40' size='340' side='right'caption='[[2f40]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2f40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F40 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2f40]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F40 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f40 RCSB], [http://www.ebi.ac.uk/pdbsum/2f40 PDBsum]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f40 OCA], [https://pdbe.org/2f40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f40 RCSB], [https://www.ebi.ac.uk/pdbsum/2f40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f40 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/Q8U0X6_PYRFU Q8U0X6_PYRFU]
Targeting of proteins for structure determination in structural genomic programs often includes the use of threading and fold recognition methods to exclude proteins belonging to well-populated fold families, but such methods can still fail to recognize preexisting folds. The authors illustrate here a method in which limited amounts of structural data are used to improve an initial homology search and the data are subsequently used to produce a structure by data-constrained refinement of an identified structural template. The data used are primarily NMR-based residual dipolar couplings, but they also include additional chemical shift and backbone-nuclear Overhauser effect data. Using this methodology, a backbone structure was efficiently produced for a 10 kDa protein (PF1455) from Pyrococcus furiosus. Its relationship to existing structures and its probable function are discussed.
 
Structure determination of a new protein from backbone-centered NMR data and NMR-assisted structure prediction.,Mayer KL, Qu Y, Bansal S, LeBlond PD, Jenney FE Jr, Brereton PS, Adams MW, Xu Y, Prestegard JH Proteins. 2006 Nov 1;65(2):480-9. PMID:16927360<ref>PMID:16927360</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Pyrococcus furiosus]]
[[Category: Large Structures]]
[[Category: Bansal, S]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: Prestegard, J H]]
[[Category: Bansal S]]
[[Category: Structural genomic]]
[[Category: Prestegard JH]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure prediction]]
[[Category: Pyrococcus furious]]
[[Category: Residual dipolar coupling]]
[[Category: Secsg]]
[[Category: Simulated annealing]]
[[Category: Unknown function]]

Latest revision as of 06:40, 1 May 2024

Structure of a Novel Protein from Backbone-Centered NMR Data and NMR-Assisted Structure Prediction

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